SVPipelinesRanking
We analyzed the performance of 53 pipelines, incorporating five aligners (LRA, minimap2, NGMLR, pbmm2, winnowmap) and twelve callers (cuteSV, cuteSV2, DeBreak, DELLY, pbsv, Picky, NanoSV, NanoVar, Sniffles, Sniffles2, SVIM, SVision). Our evaluation covered various datasets, including simulated and multiple real sample datasets, focusing on metrics like F1 score, precision, recall, length deviation, breakpoint accuracy, and Mendelian error rate (MIER).
After conducting thorough evaluations across different scenarios, we compiled a performance ranking of these 53 pipelines.
If you find our work useful, please cite: Liu, Z., Xie, Z. & Li, M. Comprehensive and deep evaluation of structural variation detection pipelines with third-generation sequencing data. Genome Biol 25, 188 (2024). https://doi.org/10.1186/s13059-024-03324-5
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| Platform | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CCS | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | CLR | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT | ONT |
| Pipeline | F1-measure | Precision-measure | Recall-measure | GT F1-measure | GT Precision-measure | GT Recall-measure | DEL-F1 | INS-F1 | DUP_INS F1 | INV-F1 | DUP-F1 | BND-F1 | DEL-Precision | INS-Precision | DUP_INS-Precision | INV-Precision | DUP-Precision | BND-Precision | DEL-Recall | INS-Recall | DUP_INS-Recall | INV-Recall | DUP-Recall | BND-Recall | DEL-svlen-biase:0 | INS-svlen-biase:0 | DEL-breakpoint-biase:0 | INS-breakpoint-biase:0 | F1-measure | Precision-measure | Recall-measure | GT F1-measure | GT Precision-measure | GT Recall-measure | DEL-F1 | INS-F1 | DUP_INS F1 | INV-F1 | DUP-F1 | BND-F1 | DEL-Precision | INS-Precision | DUP_INS-Precision | INV-Precision | DUP-Precision | BND-Precision | DEL-Recall | INS-Recall | DUP_INS-Recall | INV-Recall | DUP-Recall | BND-Recall | DEL-svlen-biase:0 | INS-svlen-biase:0 | DEL-breakpoint-biase:0 | INS-breakpoint-biase:0 | F1-measure | Precision-measure | Recall-measure | GT F1-measure | GT Precision-measure | GT Recall-measure | DEL-F1 | INS-F1 | DUP_INS F1 | INV-F1 | DUP-F1 | BND-F1 | DEL-Precision | INS-Precision | DUP_INS-Precision | INV-Precision | DUP-Precision | BND-Precision | DEL-Recall | INS-Recall | DUP_INS-Recall | INV-Recall | DUP-Recall | BND-Recall | DEL-svlen-biase:0 | INS-svlen-biase:0 | DEL-breakpoint-biase:0 | INS-breakpoint-biase:0 | F1-measure | Precision-measure | Recall-measure | GT F1-measure | GT Precision-measure | GT Recall-measure | DEL-F1 | INS-F1 | DEL-Precision | INS-Precision | DEL-Recall | INS-Recall | DEL-svlen-biase:0 | INS-svlen-biase:0 | DEL-breakpoint-biase:0 | INS-breakpoint-biase:0 | MIER | F1-measure | Precision-measure | Recall-measure | GT F1-measure | GT Precision-measure | GT Recall-measure | DEL-F1 | INS-F1 | DEL-Precision | INS-Precision | DEL-Recall | INS-Recall | DEL-svlen-biase:0 | INS-svlen-biase:0 | DEL-breakpoint-biase:0 | INS-breakpoint-biase:0 | MIER | F1-measure | Precision-measure | Recall-measure | GT F1-measure | GT Precision-measure | GT Recall-measure | DEL-F1 | INS-F1 | DEL-Precision | INS-Precision | DEL-Recall | INS-Recall | DEL-svlen-biase:0 | INS-svlen-biase:0 | DEL-breakpoint-biase:0 | INS-breakpoint-biase:0 | MIER |
| lra-cutesv | 32(3.35) | 28(4.05) | 30(3.17) | 22(2.95) | 24(3.01) | 23(2.89) | 9(0.97) | 1(0.96) | 11(0.91) | 33(0.47) | 45(0.09) | 23(0.87) | 6(0.99) | 1(1.00) | 1(0.99) | 31(0.51) | 46(0.62) | 15(0.93) | 26(0.95) | 11(0.92) | 31(0.85) | 32(0.43) | 45(0.05) | 36(0.82) | 13(1.67) | 45(0.29) | 46(0.76) | 49(0.24) | 34(3.28) | 33(4.07) | 35(3.00) | 27(2.79) | 26(2.97) | 32(2.69) | 21(0.97) | 33(0.90) | 35(0.86) | 31(0.50) | 45(0.26) | 30(0.64) | 3(0.99) | 33(0.96) | 24(0.94) | 34(0.48) | 44(0.78) | 23(0.86) | 38(0.94) | 44(0.86) | 44(0.79) | 21(0.53) | 45(0.16) | 36(0.51) | 3(2.39) | 50(0.03) | 47(0.70) | 53(0.16) | 33(3.17) | 32(4.02) | 37(2.84) | 27(2.72) | 26(2.99) | 36(2.56) | 39(0.94) | 35(0.86) | 39(0.82) | 37(0.45) | 43(0.25) | 31(0.67) | 4(0.99) | 32(0.94) | 26(0.92) | 33(0.44) | 46(0.72) | 11(0.94) | 41(0.90) | 44(0.79) | 46(0.74) | 32(0.47) | 43(0.15) | 35(0.52) | 6(2.15) | 49(0.02) | 47(0.62) | 47(0.25) | 13(1.68) | 4(1.81) | 26(1.58) | 14(1.61) | 5(1.78) | 25(1.48) | 15(0.86) | 15(0.82) | 4(0.91) | 8(0.89) | 30(0.81) | 28(0.77) | 24(2.34) | 49(0.57) | 20(2.95) | 49(0.25) | 11(1.44%) | 7(1.66) | 9(1.75) | 23(1.58) | 9(1.56) | 10(1.62) | 18(1.51) | 9(0.86) | 7(0.81) | 5(0.92) | 14(0.84) | 26(0.80) | 26(0.78) | 49(0.22) | 34(0.14) | 29(0.49) | 49(0.19) | 43(3.13%) | 24(1.62) | 7(1.74) | 35(1.51) | 20(1.51) | 14(1.63) | 32(1.41) | 24(0.83) | 21(0.78) | 3(0.90) | 20(0.85) | 36(0.78) | 32(0.73) | 34(1.00) | 51(0.08) | 31(0.89) | 50(0.24) | 31(2.76%) |
| lra-cutesv2 | 34(3.26) | 30(4.03) | 35(3.05) | 24(2.93) | 22(3.05) | 26(2.83) | 15(0.97) | 12(0.94) | 19(0.89) | 40(0.41) | 46(0.08) | 22(0.87) | 5(0.99) | 5(0.98) | 6(0.97) | 32(0.49) | 45(0.63) | 14(0.93) | 31(0.94) | 29(0.89) | 37(0.83) | 40(0.35) | 46(0.04) | 37(0.82) | 14(1.66) | 47(0.27) | 47(0.75) | 22(0.97) | 32(3.30) | 25(4.17) | 34(3.02) | 25(2.87) | 24(3.07) | 31(2.74) | 29(0.96) | 17(0.95) | 18(0.91) | 32(0.50) | 46(0.25) | 31(0.64) | 8(0.99) | 18(0.98) | 14(0.97) | 33(0.49) | 42(0.83) | 21(0.87) | 42(0.93) | 24(0.92) | 35(0.85) | 23(0.51) | 46(0.15) | 37(0.51) | 4(2.38) | 48(0.03) | 46(0.71) | 27(0.88) | 32(3.20) | 24(4.15) | 36(2.86) | 26(2.77) | 24(3.05) | 35(2.59) | 40(0.94) | 27(0.91) | 28(0.86) | 39(0.44) | 45(0.24) | 30(0.67) | 3(0.99) | 20(0.97) | 14(0.96) | 34(0.43) | 42(0.81) | 8(0.95) | 43(0.89) | 37(0.86) | 40(0.79) | 37(0.45) | 44(0.14) | 36(0.52) | 5(2.16) | 48(0.02) | 48(0.61) | 24(0.96) | 16(1.68) | 5(1.81) | 27(1.57) | 15(1.60) | 4(1.78) | 27(1.47) | 16(0.86) | 18(0.82) | 5(0.91) | 7(0.89) | 31(0.81) | 31(0.76) | 23(2.34) | 47(0.57) | 19(2.95) | 27(2.10) | 16(1.49%) | 11(1.64) | 16(1.73) | 24(1.58) | 8(1.56) | 9(1.65) | 19(1.50) | 23(0.84) | 8(0.80) | 6(0.91) | 17(0.81) | 30(0.78) | 13(0.80) | 53(0.20) | 37(0.14) | 28(0.49) | 23(0.65) | 44(3.20%) | 17(1.63) | 3(1.75) | 33(1.53) | 14(1.53) | 5(1.67) | 27(1.42) | 28(0.83) | 13(0.80) | 1(0.90) | 12(0.86) | 38(0.77) | 23(0.76) | 35(1.00) | 50(0.09) | 30(0.89) | 26(0.88) | 20(2.36%) |
| lra-debreak | 38(3.04) | 26(4.12) | 38(2.88) | 32(2.44) | 30(2.74) | 34(2.52) | 41(0.94) | 5(0.95) | 15(0.91) | 13(0.65) | 47(0.07) | 37(0.44) | 43(0.93) | 18(0.97) | 15(0.94) | 14(0.71) | 8(0.99) | 35(0.52) | 29(0.94) | 8(0.93) | 21(0.88) | 18(0.59) | 47(0.04) | 44(0.38) | 10(1.81) | 37(0.52) | 28(1.27) | 42(0.38) | 35(3.18) | 29(4.15) | 33(3.13) | 31(2.60) | 28(2.86) | 30(2.75) | 33(0.96) | 25(0.93) | 21(0.90) | 2(0.78) | 48(0.07) | 37(0.43) | 41(0.96) | 32(0.96) | 30(0.92) | 8(0.73) | 1(1.00) | 37(0.50) | 18(0.96) | 30(0.91) | 30(0.87) | 2(0.84) | 48(0.04) | 42(0.38) | 6(2.36) | 49(0.03) | 27(1.16) | 47(0.27) | 34(3.09) | 29(4.13) | 32(2.98) | 32(2.49) | 28(2.82) | 34(2.60) | 38(0.95) | 30(0.89) | 30(0.86) | 2(0.77) | 48(0.05) | 36(0.43) | 40(0.95) | 33(0.93) | 32(0.90) | 8(0.75) | 1(1.00) | 37(0.49) | 32(0.94) | 38(0.85) | 36(0.82) | 1(0.78) | 48(0.03) | 41(0.38) | 9(2.01) | 42(0.03) | 27(1.15) | 48(0.25) | 30(1.63) | 42(1.66) | 21(1.61) | 28(1.53) | 35(1.57) | 22(1.50) | 37(0.83) | 28(0.80) | 44(0.84) | 39(0.82) | 27(0.82) | 23(0.79) | 21(2.38) | 37(0.76) | 43(0.36) | 50(0.23) | 44(3.40%) | 32(1.49) | 41(1.45) | 17(1.60) | 27(1.33) | 35(1.27) | 20(1.49) | 28(0.83) | 32(0.66) | 39(0.86) | 41(0.59) | 24(0.81) | 19(0.79) | 50(0.21) | 42(0.13) | 43(0.31) | 46(0.22) | 34(2.84%) | 28(1.59) | 33(1.65) | 26(1.55) | 26(1.46) | 30(1.50) | 26(1.42) | 36(0.81) | 22(0.78) | 35(0.83) | 34(0.81) | 32(0.80) | 24(0.76) | 38(0.94) | 49(0.09) | 43(0.38) | 48(0.27) | 47(3.51%) |
| lra-sniffles2 | 37(3.05) | 1(4.75) | 40(2.70) | 35(2.26) | 32(2.55) | 40(2.16) | 25(0.96) | 6(0.95) | 18(0.90) | 25(0.54) | 49(0.01) | 33(0.59) | 14(0.98) | 9(0.98) | 14(0.94) | 1(1.00) | 1(1.00) | 24(0.79) | 33(0.94) | 14(0.92) | 30(0.86) | 38(0.37) | 49(0.00) | 39(0.47) | 18(1.36) | 15(1.21) | 7(2.32) | 41(0.42) | 38(2.92) | 36(3.67) | 40(2.59) | 33(2.53) | 29(2.84) | 40(2.37) | 16(0.97) | 30(0.92) | 30(0.88) | 4(0.70) | 49(0.00) | 39(0.33) | 9(0.99) | 31(0.96) | 26(0.94) | 1(0.97) | 49(0.00) | 27(0.76) | 31(0.95) | 37(0.89) | 40(0.83) | 18(0.55) | 49(0.00) | 43(0.21) | 14(1.82) | 28(0.13) | 16(1.77) | 41(0.44) | 36(2.92) | 34(3.65) | 38(2.58) | 35(2.37) | 33(2.56) | 39(2.26) | 35(0.95) | 31(0.88) | 34(0.84) | 5(0.71) | 49(0.00) | 37(0.39) | 13(0.98) | 31(0.94) | 28(0.91) | 3(0.88) | 49(0.00) | 22(0.84) | 39(0.92) | 41(0.82) | 41(0.77) | 16(0.59) | 49(0.00) | 42(0.25) | 18(1.47) | 24(0.14) | 16(1.84) | 43(0.36) | 24(1.65) | 28(1.71) | 22(1.61) | 24(1.55) | 21(1.62) | 24(1.49) | 30(0.84) | 21(0.81) | 23(0.88) | 33(0.83) | 29(0.81) | 21(0.79) | 6(3.23) | 9(1.29) | 48(0.08) | 25(2.10) | 21(1.64%) | 25(1.57) | 33(1.59) | 18(1.60) | 17(1.46) | 25(1.45) | 16(1.51) | 10(0.86) | 29(0.72) | 9(0.91) | 36(0.68) | 22(0.81) | 20(0.79) | 20(0.96) | 29(0.15) | 51(0.10) | 25(0.60) | 28(2.76%) | 22(1.62) | 9(1.73) | 31(1.53) | 21(1.50) | 18(1.61) | 31(1.41) | 21(0.83) | 18(0.79) | 8(0.89) | 26(0.84) | 35(0.79) | 26(0.75) | 6(2.35) | 23(0.26) | 51(0.10) | 28(0.69) | 37(2.88%) |
| lra-svim | 29(3.40) | 10(4.37) | 33(3.13) | 37(2.18) | 34(2.47) | 39(2.17) | 33(0.96) | 15(0.93) | 23(0.88) | 23(0.57) | 48(0.07) | 21(0.87) | 39(0.96) | 23(0.95) | 17(0.94) | 2(0.91) | 47(0.60) | 13(0.94) | 22(0.95) | 15(0.92) | 38(0.82) | 35(0.41) | 48(0.03) | 38(0.81) | 26(1.05) | 28(0.75) | 30(1.10) | 18(1.13) | 41(2.66) | 17(4.23) | 43(2.36) | 37(2.19) | 33(2.62) | 41(2.15) | 30(0.96) | 40(0.86) | 42(0.82) | 35(0.49) | 47(0.18) | 42(0.17) | 32(0.97) | 45(0.86) | 39(0.86) | 4(0.78) | 41(0.85) | 26(0.77) | 23(0.95) | 43(0.86) | 46(0.79) | 45(0.35) | 47(0.10) | 44(0.10) | 20(1.68) | 37(0.08) | 29(1.13) | 26(0.91) | 40(2.54) | 22(4.17) | 43(2.23) | 38(2.22) | 30(2.80) | 40(2.08) | 36(0.95) | 32(0.87) | 37(0.83) | 31(0.48) | 46(0.15) | 43(0.09) | 35(0.97) | 36(0.91) | 29(0.91) | 4(0.85) | 41(0.82) | 29(0.62) | 38(0.93) | 40(0.83) | 44(0.76) | 45(0.33) | 46(0.08) | 43(0.05) | 20(1.41) | 35(0.04) | 31(1.02) | 26(0.89) | 25(1.65) | 39(1.68) | 15(1.63) | 26(1.54) | 37(1.56) | 20(1.52) | 31(0.84) | 25(0.81) | 35(0.86) | 37(0.82) | 21(0.83) | 19(0.80) | 10(2.98) | 26(1.10) | 16(3.05) | 26(2.10) | 15(1.48%) | 15(1.60) | 31(1.60) | 12(1.62) | 31(1.30) | 38(1.20) | 23(1.44) | 16(0.85) | 17(0.75) | 36(0.87) | 31(0.72) | 6(0.83) | 21(0.79) | 33(0.53) | 15(0.18) | 24(0.52) | 29(0.56) | 4(1.69%) | 26(1.61) | 30(1.65) | 22(1.57) | 31(1.40) | 35(1.40) | 29(1.42) | 27(0.83) | 26(0.78) | 26(0.86) | 35(0.80) | 30(0.81) | 22(0.76) | 21(1.48) | 35(0.16) | 33(0.83) | 32(0.62) | 28(2.69%) |
| lra-svision | 41(2.54) | 43(3.08) | 41(2.57) | 38(1.98) | 38(2.03) | 37(2.30) | 44(0.93) | 29(0.90) | 34(0.85) | 21(0.62) | 44(0.10) | 45(0.00) | 46(0.88) | 39(0.85) | 40(0.80) | 20(0.65) | 43(0.69) | 45(0.00) | 1(0.97) | 1(0.95) | 14(0.90) | 19(0.59) | 44(0.05) | 45(0.00) | 23(1.13) | 33(0.65) | 45(0.84) | 9(1.34) | 40(2.67) | 44(3.13) | 39(2.72) | 38(2.15) | 38(2.12) | 38(2.51) | 44(0.93) | 43(0.77) | 44(0.75) | 8(0.68) | 44(0.30) | 45(0.00) | 49(0.89) | 47(0.66) | 46(0.64) | 11(0.72) | 40(0.87) | 45(0.00) | 5(0.97) | 18(0.93) | 19(0.90) | 11(0.65) | 44(0.18) | 45(0.00) | 16(1.81) | 19(0.20) | 39(0.78) | 24(0.96) | 39(2.68) | 40(3.24) | 39(2.58) | 37(2.23) | 38(2.30) | 38(2.39) | 43(0.93) | 39(0.84) | 41(0.80) | 15(0.63) | 42(0.28) | 44(0.00) | 46(0.91) | 45(0.80) | 43(0.74) | 16(0.71) | 40(0.83) | 44(0.00) | 19(0.96) | 31(0.89) | 27(0.87) | 19(0.57) | 42(0.17) | 44(0.00) | 15(1.53) | 17(0.17) | 42(0.74) | 23(0.96) | 27(1.64) | 40(1.66) | 17(1.62) | 30(1.53) | 38(1.55) | 21(1.51) | 36(0.83) | 27(0.81) | 40(0.85) | 40(0.82) | 25(0.82) | 18(0.80) | 14(2.76) | 32(0.80) | 30(2.56) | 34(0.76) | 10(1.43%) | 30(1.55) | 39(1.51) | 16(1.61) | 35(1.23) | 41(1.11) | 25(1.42) | 26(0.84) | 30(0.71) | 38(0.87) | 39(0.65) | 21(0.81) | 12(0.80) | 41(0.34) | 48(0.12) | 22(0.55) | 32(0.46) | 14(1.91%) | 29(1.59) | 32(1.65) | 27(1.55) | 37(1.38) | 36(1.38) | 33(1.39) | 35(0.82) | 30(0.77) | 25(0.86) | 36(0.79) | 33(0.79) | 25(0.75) | 27(1.17) | 30(0.22) | 32(0.87) | 34(0.52) | 21(2.46%) |
| minimap2-cutesv | 16(3.76) | 31(4.02) | 18(3.60) | 17(3.12) | 19(3.12) | 17(3.12) | 2(0.97) | 8(0.94) | 13(0.91) | 43(0.32) | 24(0.56) | 4(0.97) | 7(0.99) | 17(0.97) | 26(0.91) | 43(0.31) | 40(0.77) | 5(0.98) | 16(0.96) | 17(0.91) | 8(0.91) | 41(0.33) | 16(0.43) | 10(0.97) | 3(1.93) | 46(0.28) | 42(0.89) | 46(0.30) | 13(3.88) | 23(4.19) | 10(3.75) | 19(3.16) | 23(3.12) | 13(3.21) | 2(0.98) | 15(0.95) | 13(0.93) | 41(0.39) | 15(0.60) | 8(0.96) | 2(0.99) | 21(0.98) | 20(0.95) | 44(0.35) | 36(0.91) | 12(0.96) | 15(0.96) | 20(0.93) | 14(0.91) | 31(0.45) | 15(0.45) | 13(0.96) | 1(2.42) | 47(0.03) | 42(0.75) | 49(0.25) | 15(3.83) | 30(4.13) | 14(3.70) | 21(3.11) | 23(3.06) | 20(3.17) | 7(0.97) | 20(0.93) | 15(0.91) | 43(0.41) | 16(0.58) | 14(0.93) | 2(0.99) | 28(0.96) | 24(0.93) | 43(0.36) | 35(0.90) | 14(0.92) | 21(0.95) | 23(0.91) | 19(0.89) | 33(0.47) | 16(0.43) | 22(0.94) | 3(2.20) | 46(0.02) | 44(0.72) | 49(0.24) | 5(1.71) | 2(1.82) | 20(1.62) | 3(1.66) | 1(1.79) | 17(1.55) | 6(0.87) | 4(0.84) | 3(0.92) | 2(0.90) | 20(0.83) | 24(0.79) | 22(2.36) | 46(0.60) | 7(3.31) | 41(0.40) | 6(1.33%) | 3(1.69) | 4(1.77) | 11(1.63) | 3(1.62) | 6(1.69) | 4(1.57) | 5(0.87) | 2(0.82) | 10(0.91) | 8(0.86) | 10(0.83) | 11(0.80) | 51(0.21) | 32(0.15) | 32(0.48) | 47(0.21) | 39(2.89%) | 5(1.67) | 17(1.72) | 14(1.62) | 5(1.59) | 10(1.65) | 8(1.54) | 10(0.85) | 7(0.81) | 16(0.87) | 19(0.85) | 13(0.84) | 20(0.78) | 31(1.05) | 45(0.10) | 25(1.26) | 45(0.34) | 29(2.69%) |
| minimap2-cutesv2 | 18(3.75) | 29(4.04) | 20(3.58) | 19(3.09) | 21(3.08) | 19(3.10) | 7(0.97) | 25(0.92) | 17(0.90) | 44(0.32) | 20(0.56) | 3(0.97) | 8(0.99) | 32(0.93) | 27(0.91) | 44(0.31) | 37(0.83) | 4(0.98) | 23(0.95) | 21(0.91) | 16(0.89) | 42(0.33) | 18(0.43) | 11(0.97) | 1(1.96) | 41(0.38) | 41(0.90) | 21(1.04) | 11(3.89) | 20(4.21) | 11(3.73) | 18(3.16) | 22(3.14) | 16(3.19) | 1(0.98) | 11(0.96) | 12(0.94) | 43(0.39) | 13(0.60) | 7(0.96) | 1(0.99) | 19(0.98) | 19(0.95) | 40(0.36) | 34(0.91) | 11(0.96) | 14(0.96) | 15(0.93) | 12(0.92) | 36(0.43) | 14(0.45) | 14(0.96) | 2(2.42) | 44(0.04) | 43(0.74) | 13(1.20) | 12(3.86) | 23(4.16) | 11(3.73) | 18(3.14) | 22(3.10) | 17(3.20) | 5(0.97) | 16(0.94) | 14(0.92) | 42(0.42) | 15(0.58) | 12(0.94) | 1(0.99) | 26(0.96) | 22(0.94) | 40(0.39) | 33(0.90) | 15(0.92) | 20(0.95) | 21(0.91) | 16(0.90) | 34(0.47) | 17(0.43) | 15(0.96) | 4(2.20) | 44(0.02) | 45(0.72) | 20(1.01) | 6(1.71) | 23(1.73) | 7(1.69) | 4(1.66) | 10(1.69) | 7(1.63) | 7(0.87) | 1(0.84) | 14(0.89) | 28(0.84) | 9(0.85) | 8(0.84) | 30(2.14) | 42(0.66) | 14(3.11) | 20(2.51) | 29(2.01%) | 4(1.68) | 10(1.75) | 14(1.62) | 4(1.61) | 5(1.69) | 8(1.55) | 7(0.86) | 5(0.82) | 11(0.91) | 13(0.84) | 15(0.82) | 16(0.80) | 52(0.21) | 31(0.15) | 30(0.49) | 15(1.00) | 37(2.85%) | 4(1.67) | 15(1.72) | 16(1.62) | 4(1.59) | 7(1.66) | 13(1.53) | 9(0.85) | 6(0.81) | 15(0.87) | 17(0.85) | 14(0.84) | 18(0.79) | 32(1.05) | 42(0.11) | 24(1.27) | 18(1.37) | 14(2.23%) |
| minimap2-debreak | 28(3.40) | 25(4.13) | 34(3.08) | 23(2.94) | 17(3.26) | 27(2.83) | 16(0.97) | 2(0.96) | 3(0.94) | 29(0.51) | 30(0.50) | 34(0.48) | 25(0.97) | 16(0.97) | 11(0.96) | 19(0.66) | 5(1.00) | 33(0.54) | 11(0.96) | 4(0.94) | 6(0.92) | 36(0.41) | 34(0.33) | 40(0.43) | 9(1.85) | 36(0.54) | 25(1.38) | 39(0.45) | 30(3.50) | 22(4.20) | 32(3.17) | 21(3.12) | 10(3.49) | 24(2.98) | 10(0.97) | 2(0.97) | 2(0.95) | 20(0.56) | 31(0.52) | 34(0.48) | 22(0.98) | 12(0.99) | 12(0.98) | 16(0.69) | 5(1.00) | 34(0.55) | 11(0.96) | 4(0.96) | 5(0.93) | 28(0.47) | 33(0.35) | 41(0.43) | 5(2.37) | 42(0.05) | 22(1.40) | 42(0.39) | 27(3.46) | 21(4.20) | 30(3.12) | 19(3.14) | 7(3.57) | 24(2.97) | 13(0.97) | 2(0.96) | 6(0.94) | 25(0.56) | 30(0.49) | 34(0.47) | 22(0.97) | 14(0.98) | 13(0.96) | 17(0.71) | 5(1.00) | 34(0.55) | 15(0.96) | 4(0.95) | 7(0.92) | 35(0.47) | 32(0.33) | 40(0.41) | 8(2.05) | 43(0.03) | 20(1.52) | 41(0.37) | 12(1.68) | 24(1.72) | 14(1.65) | 17(1.59) | 19(1.63) | 14(1.57) | 18(0.86) | 13(0.83) | 24(0.88) | 23(0.85) | 15(0.84) | 17(0.81) | 28(2.19) | 35(0.80) | 38(0.55) | 40(0.40) | 47(4.23%) | 24(1.58) | 35(1.56) | 7(1.63) | 16(1.47) | 27(1.43) | 9(1.55) | 14(0.85) | 26(0.73) | 27(0.88) | 35(0.68) | 11(0.83) | 10(0.80) | 46(0.25) | 41(0.13) | 34(0.46) | 39(0.33) | 45(3.26%) | 15(1.64) | 29(1.66) | 11(1.63) | 18(1.52) | 28(1.54) | 17(1.52) | 30(0.83) | 5(0.81) | 36(0.83) | 28(0.83) | 16(0.83) | 12(0.80) | 36(0.97) | 40(0.11) | 37(0.57) | 38(0.44) | 41(3.06%) |
| minimap2-delly | 46(1.90) | 50(1.95) | 51(1.85) | 43(1.78) | 42(1.73) | 46(1.84) | 11(0.97) | 16(0.93) | 25(0.87) | 46(0.00) | 50(0.00) | 46(0.00) | 22(0.97) | 12(0.97) | 7(0.97) | 46(0.00) | 50(0.00) | 46(0.00) | 9(0.96) | 27(0.89) | 43(0.79) | 46(0.00) | 50(0.00) | 46(0.00) | 39(0.21) | 5(1.97) | 14(1.86) | 25(0.90) | 46(1.93) | 52(1.96) | 50(1.90) | 41(1.83) | 45(1.77) | 46(1.89) | 12(0.97) | 9(0.96) | 22(0.90) | 46(0.00) | 50(0.00) | 46(0.00) | 36(0.97) | 9(0.99) | 7(0.98) | 46(0.00) | 50(0.00) | 46(0.00) | 6(0.97) | 16(0.93) | 41(0.82) | 46(0.00) | 50(0.00) | 46(0.00) | 44(0.13) | 7(0.97) | 10(1.99) | 22(1.02) | 45(1.92) | 52(1.95) | 48(1.89) | 42(1.82) | 44(1.77) | 44(1.87) | 10(0.97) | 8(0.95) | 19(0.89) | 46(0.00) | 50(0.00) | 45(0.00) | 28(0.97) | 11(0.98) | 6(0.98) | 46(0.00) | 50(0.00) | 45(0.00) | 9(0.96) | 14(0.92) | 37(0.82) | 46(0.00) | 50(0.00) | 45(0.00) | 44(0.18) | 7(1.35) | 8(2.00) | 25(0.95) | 39(1.60) | 12(1.75) | 41(1.49) | 33(1.51) | 12(1.67) | 37(1.40) | 33(0.84) | 41(0.76) | 20(0.88) | 14(0.87) | 32(0.81) | 45(0.68) | 43(0.58) | 22(1.15) | 12(3.14) | 7(4.29) | 2(1.20%) | 21(1.59) | 26(1.67) | 25(1.53) | 19(1.41) | 23(1.46) | 27(1.38) | 18(0.85) | 22(0.74) | 22(0.89) | 25(0.78) | 19(0.81) | 28(0.72) | 8(1.22) | 43(0.13) | 8(1.58) | 6(2.38) | 18(2.12%) | 23(1.62) | 13(1.72) | 29(1.54) | 15(1.53) | 13(1.64) | 22(1.45) | 26(0.83) | 19(0.79) | 28(0.85) | 4(0.87) | 26(0.81) | 34(0.73) | 43(0.56) | 5(0.52) | 8(2.70) | 7(3.67) | 48(3.63%) |
| minimap2-nanosv | 52(1.24) | 48(2.17) | 48(2.13) | 49(0.96) | 47(1.51) | 49(1.74) | 49(0.16) | 49(0.65) | 49(0.62) | 47(0.00) | 42(0.29) | 42(0.15) | 48(0.77) | 51(0.50) | 51(0.49) | 47(0.00) | 38(0.82) | 42(0.08) | 49(0.09) | 24(0.90) | 35(0.84) | 47(0.00) | 42(0.18) | 14(0.96) | 45(0.16) | 10(1.38) | 24(1.46) | 16(1.18) | 45(2.01) | 47(2.93) | 46(2.18) | 48(1.62) | 39(2.08) | 44(1.95) | 50(0.15) | 49(0.64) | 49(0.62) | 47(0.00) | 42(0.37) | 22(0.85) | 51(0.70) | 53(0.50) | 53(0.49) | 47(0.00) | 26(0.96) | 25(0.77) | 50(0.08) | 27(0.92) | 34(0.86) | 47(0.00) | 42(0.23) | 15(0.96) | 40(0.21) | 18(0.21) | 17(1.68) | 11(1.34) | 44(1.95) | 49(2.90) | 45(2.14) | 47(1.61) | 41(2.10) | 43(1.95) | 49(0.14) | 47(0.61) | 47(0.60) | 47(0.00) | 40(0.34) | 22(0.86) | 52(0.70) | 53(0.47) | 53(0.46) | 47(0.00) | 28(0.95) | 27(0.77) | 49(0.08) | 29(0.89) | 33(0.83) | 47(0.00) | 40(0.21) | 13(0.96) | 35(0.42) | 25(0.13) | 18(1.69) | 13(1.16) | 49(0.83) | 51(1.30) | 47(0.93) | 44(0.79) | 42(1.25) | 44(0.89) | 50(0.10) | 46(0.72) | 49(0.68) | 52(0.62) | 50(0.06) | 2(0.87) | 48(0.55) | 2(1.47) | 9(3.18) | 1(7.00) | 34(2.16%) | 48(0.58) | 48(0.99) | 47(0.88) | 47(0.49) | 45(0.85) | 44(0.80) | 48(0.12) | 44(0.46) | 48(0.67) | 49(0.32) | 48(0.07) | 6(0.81) | 17(1.00) | 8(0.23) | 15(0.85) | 1(2.56) | 8(1.75%) | 49(0.61) | 50(0.98) | 48(0.84) | 49(0.54) | 46(0.89) | 44(0.76) | 50(0.09) | 49(0.51) | 48(0.59) | 53(0.38) | 50(0.05) | 16(0.79) | 44(0.55) | 15(0.32) | 9(2.63) | 1(5.01) | 40(3.05%) |
| minimap2-nanovar | 30(3.39) | 34(3.80) | 29(3.29) | 18(3.11) | 18(3.26) | 18(3.10) | 42(0.93) | 42(0.80) | 43(0.79) | 42(0.35) | 39(0.39) | 17(0.91) | 29(0.97) | 42(0.84) | 36(0.84) | 45(0.31) | 39(0.81) | 23(0.87) | 43(0.90) | 47(0.77) | 48(0.74) | 37(0.39) | 40(0.26) | 8(0.97) | 47(0.15) | 12(1.31) | 9(1.97) | 1(2.24) | 26(3.55) | 30(4.15) | 29(3.36) | 13(3.30) | 8(3.60) | 12(3.21) | 42(0.94) | 41(0.85) | 41(0.83) | 44(0.39) | 40(0.43) | 13(0.95) | 28(0.97) | 41(0.91) | 33(0.91) | 41(0.35) | 21(0.97) | 13(0.94) | 43(0.90) | 47(0.80) | 49(0.76) | 37(0.43) | 40(0.27) | 16(0.96) | 38(0.24) | 33(0.11) | 19(1.49) | 5(2.17) | 26(3.46) | 31(4.03) | 29(3.34) | 16(3.20) | 10(3.44) | 19(3.18) | 41(0.94) | 42(0.80) | 42(0.79) | 44(0.39) | 39(0.40) | 16(0.93) | 26(0.97) | 42(0.86) | 34(0.87) | 45(0.34) | 23(0.96) | 20(0.90) | 40(0.91) | 47(0.75) | 47(0.72) | 36(0.47) | 39(0.25) | 18(0.96) | 39(0.24) | 29(0.06) | 19(1.63) | 5(2.13) | 20(1.67) | 27(1.71) | 18(1.62) | 13(1.61) | 13(1.66) | 16(1.56) | 24(0.85) | 19(0.82) | 26(0.87) | 26(0.84) | 24(0.82) | 20(0.80) | 44(0.58) | 3(1.46) | 17(3.01) | 8(4.08) | 30(2.05%) | 26(1.57) | 24(1.67) | 30(1.48) | 14(1.48) | 16(1.55) | 24(1.42) | 27(0.83) | 23(0.73) | 18(0.90) | 29(0.77) | 31(0.78) | 32(0.71) | 25(0.76) | 10(0.20) | 12(1.07) | 13(1.68) | 33(2.83%) | 35(1.54) | 35(1.63) | 37(1.46) | 25(1.46) | 27(1.55) | 34(1.38) | 29(0.83) | 40(0.72) | 12(0.88) | 40(0.76) | 34(0.79) | 42(0.68) | 46(0.47) | 25(0.26) | 13(2.19) | 8(2.91) | 35(2.87%) |
| minimap2-pbsv | 21(3.69) | 8(4.43) | 26(3.37) | 15(3.16) | 8(3.52) | 22(2.99) | 34(0.96) | 10(0.94) | 10(0.91) | 41(0.36) | 34(0.46) | 1(0.98) | 30(0.97) | 3(0.99) | 4(0.97) | 29(0.54) | 20(0.94) | 1(1.00) | 32(0.94) | 30(0.89) | 28(0.86) | 44(0.27) | 35(0.31) | 18(0.96) | 43(0.17) | 2(2.51) | 13(1.91) | 3(2.05) | 16(3.85) | 3(4.61) | 24(3.52) | 9(3.34) | 4(3.76) | 20(3.14) | 25(0.96) | 6(0.96) | 11(0.94) | 34(0.49) | 37(0.48) | 9(0.96) | 35(0.97) | 2(1.00) | 3(0.98) | 13(0.70) | 19(0.97) | 3(0.97) | 17(0.96) | 17(0.93) | 23(0.90) | 44(0.37) | 36(0.32) | 21(0.94) | 49(0.08) | 1(2.31) | 14(1.85) | 4(2.26) | 16(3.80) | 4(4.56) | 23(3.51) | 13(3.28) | 6(3.67) | 21(3.11) | 20(0.96) | 4(0.96) | 7(0.93) | 30(0.51) | 37(0.46) | 18(0.92) | 37(0.97) | 2(0.99) | 4(0.98) | 14(0.71) | 16(0.98) | 17(0.91) | 18(0.96) | 12(0.93) | 20(0.89) | 42(0.39) | 37(0.30) | 23(0.94) | 51(0.11) | 3(1.74) | 13(1.86) | 2(2.53) | 35(1.61) | 20(1.73) | 34(1.52) | 34(1.51) | 22(1.61) | 30(1.43) | 38(0.83) | 33(0.79) | 28(0.87) | 21(0.85) | 38(0.79) | 37(0.73) | 4(3.29) | 13(1.23) | 3(5.88) | 17(2.57) | 43(3.28%) | 16(1.60) | 15(1.73) | 29(1.49) | 28(1.33) | 32(1.34) | 30(1.32) | 32(0.82) | 13(0.78) | 35(0.87) | 7(0.86) | 32(0.77) | 29(0.71) | 2(2.38) | 1(0.50) | 3(4.18) | 8(2.28) | 25(2.57%) | 40(1.50) | 25(1.70) | 40(1.36) | 35(1.38) | 23(1.58) | 39(1.27) | 40(0.76) | 32(0.74) | 31(0.85) | 13(0.85) | 42(0.70) | 44(0.66) | 2(2.84) | 2(0.60) | 3(5.16) | 12(2.29) | 42(3.08%) |
| minimap2-picky | 53(1.09) | 53(1.54) | 49(1.89) | 53(0.53) | 53(0.61) | 53(0.62) | 53(0.03) | 53(0.01) | 53(0.14) | 24(0.55) | 41(0.37) | 44(0.13) | 53(0.35) | 53(0.21) | 53(0.29) | 30(0.54) | 49(0.38) | 44(0.07) | 53(0.01) | 53(0.00) | 53(0.09) | 21(0.57) | 29(0.37) | 24(0.93) | 52(0.03) | 53(0.00) | 20(1.50) | 52(0.17) | 53(1.25) | 43(3.15) | 49(1.90) | 53(0.70) | 53(1.30) | 53(0.67) | 53(0.07) | 53(0.03) | 53(0.18) | 23(0.54) | 33(0.50) | 44(0.12) | 43(0.93) | 34(0.95) | 48(0.62) | 27(0.58) | 48(0.63) | 44(0.06) | 53(0.04) | 53(0.01) | 53(0.10) | 24(0.51) | 23(0.41) | 25(0.93) | 53(0.01) | 51(0.00) | 41(0.75) | 52(0.21) | 53(1.24) | 46(3.01) | 47(1.91) | 52(0.67) | 52(1.11) | 52(0.66) | 53(0.05) | 53(0.02) | 53(0.17) | 23(0.58) | 32(0.48) | 42(0.11) | 49(0.85) | 39(0.88) | 48(0.57) | 25(0.62) | 48(0.60) | 43(0.06) | 53(0.03) | 53(0.01) | 53(0.10) | 22(0.55) | 25(0.40) | 25(0.93) | 53(0.01) | 51(0.00) | 38(0.80) | 52(0.18) | 53(0.04) | 53(1.19) | 53(0.02) | 53(0.01) | 53(0.26) | 53(0.01) | 53(0.03) | 53(0.01) | 53(0.44) | 48(0.74) | 53(0.02) | 53(0.01) | 53(0.09) | 50(0.40) | 24(2.75) | 52(0.17) | NA | 53(0.09) | 53(0.60) | 53(0.06) | 52(0.02) | 53(0.14) | 52(0.02) | 53(0.07) | 53(0.02) | 53(0.33) | 52(0.27) | 52(0.04) | 53(0.02) | 43(0.34) | 53(0.01) | 9(1.37) | 38(0.34) | NA | 53(0.03) | 53(0.81) | 53(0.02) | 53(0.01) | 51(0.27) | 53(0.01) | 53(0.03) | 53(0.01) | 53(0.29) | 47(0.52) | 53(0.02) | 53(0.00) | 52(0.12) | 52(0.08) | 22(1.27) | 53(0.20) | NA |
| minimap2-sniffles | 24(3.61) | 33(3.90) | 19(3.60) | 47(1.27) | 52(0.95) | 41(2.07) | 38(0.95) | 40(0.83) | 42(0.80) | 26(0.54) | 31(0.49) | 26(0.80) | 26(0.97) | 37(0.86) | 41(0.79) | 34(0.47) | 30(0.88) | 27(0.72) | 41(0.93) | 45(0.80) | 40(0.81) | 13(0.63) | 33(0.34) | 28(0.90) | 33(0.48) | 18(1.17) | 4(3.12) | 31(0.55) | 19(3.83) | 10(4.36) | 18(3.65) | 39(1.89) | 47(1.56) | 34(2.65) | 27(0.96) | 35(0.90) | 34(0.86) | 17(0.61) | 34(0.50) | 21(0.87) | 21(0.98) | 37(0.93) | 38(0.86) | 26(0.58) | 7(0.99) | 20(0.87) | 30(0.95) | 42(0.86) | 32(0.87) | 12(0.65) | 34(0.33) | 31(0.86) | 32(0.70) | 25(0.18) | 3(2.86) | 31(0.62) | 17(3.76) | 10(4.30) | 21(3.58) | 40(1.96) | 48(1.62) | 31(2.67) | 24(0.96) | 37(0.86) | 36(0.83) | 16(0.63) | 33(0.47) | 24(0.84) | 21(0.98) | 38(0.90) | 39(0.83) | 28(0.61) | 14(0.98) | 24(0.82) | 27(0.94) | 42(0.82) | 35(0.83) | 11(0.65) | 33(0.31) | 31(0.86) | 32(0.58) | 16(0.17) | 3(2.97) | 38(0.48) | 29(1.64) | 18(1.73) | 30(1.56) | 48(0.57) | 50(0.51) | 47(0.66) | 43(0.81) | 11(0.83) | 38(0.85) | 10(0.88) | 41(0.78) | 26(0.78) | 1(3.36) | 11(1.25) | 52(0.03) | 18(2.56) | 35(2.17%) | 44(1.14) | 45(1.15) | 28(1.50) | 46(0.49) | 49(0.43) | 46(0.66) | 29(0.83) | 49(0.31) | 42(0.85) | 51(0.30) | 20(0.81) | 36(0.69) | 15(1.05) | 18(0.17) | 49(0.13) | 33(0.45) | 2(1.02%) | 43(1.47) | 42(1.47) | 34(1.51) | 44(0.62) | 49(0.54) | 46(0.74) | 43(0.73) | 34(0.74) | 45(0.70) | 38(0.77) | 29(0.81) | 39(0.70) | 8(2.20) | 18(0.31) | 50(0.10) | 23(1.03) | 1(0.12%) |
| minimap2-sniffles2 | 33(3.30) | 11(4.30) | 31(3.16) | 30(2.50) | 28(2.78) | 36(2.46) | 5(0.97) | 21(0.92) | 20(0.89) | 37(0.45) | 43(0.18) | 27(0.77) | 12(0.98) | 31(0.93) | 29(0.90) | 18(0.68) | 2(1.00) | 28(0.71) | 13(0.96) | 13(0.92) | 24(0.87) | 43(0.33) | 43(0.10) | 34(0.85) | 16(1.44) | 19(1.09) | 5(3.05) | 36(0.47) | 29(3.50) | 11(4.31) | 28(3.38) | 23(3.06) | 16(3.34) | 23(3.04) | 3(0.98) | 5(0.96) | 15(0.93) | 22(0.55) | 43(0.32) | 29(0.69) | 10(0.99) | 20(0.98) | 16(0.96) | 6(0.76) | 2(1.00) | 32(0.58) | 10(0.96) | 7(0.95) | 21(0.90) | 38(0.43) | 43(0.19) | 34(0.85) | 13(1.92) | 24(0.18) | 4(2.80) | 29(0.64) | 29(3.44) | 13(4.26) | 28(3.35) | 23(3.04) | 17(3.29) | 23(3.05) | 1(0.97) | 14(0.94) | 16(0.91) | 27(0.54) | 41(0.30) | 29(0.69) | 10(0.99) | 27(0.96) | 19(0.94) | 12(0.73) | 2(1.00) | 33(0.58) | 10(0.96) | 10(0.93) | 23(0.88) | 40(0.43) | 41(0.17) | 33(0.85) | 13(1.70) | 21(0.15) | 1(2.98) | 37(0.48) | 8(1.70) | 32(1.70) | 6(1.69) | 5(1.64) | 17(1.65) | 6(1.63) | 13(0.86) | 3(0.84) | 33(0.86) | 25(0.84) | 6(0.86) | 10(0.84) | 9(3.01) | 7(1.31) | 53(0.03) | 16(2.62) | 22(1.68%) | 12(1.64) | 25(1.67) | 8(1.63) | 10(1.55) | 14(1.56) | 7(1.56) | 6(0.86) | 14(0.78) | 19(0.90) | 28(0.77) | 7(0.83) | 15(0.80) | 24(0.78) | 17(0.17) | 52(0.10) | 21(0.71) | 23(2.48%) | 10(1.66) | 26(1.70) | 13(1.62) | 8(1.58) | 16(1.63) | 12(1.53) | 16(0.85) | 12(0.81) | 23(0.86) | 27(0.84) | 15(0.84) | 14(0.79) | 9(2.16) | 14(0.32) | 49(0.10) | 14(1.69) | 19(2.35%) |
| minimap2-svim | 25(3.61) | 9(4.39) | 27(3.35) | 33(2.32) | 29(2.76) | 38(2.25) | 8(0.97) | 37(0.85) | 36(0.84) | 45(0.31) | 27(0.53) | 10(0.95) | 19(0.98) | 44(0.80) | 39(0.81) | 10(0.77) | 35(0.85) | 2(0.99) | 7(0.96) | 28(0.89) | 22(0.88) | 45(0.20) | 27(0.38) | 26(0.91) | 28(1.02) | 26(0.79) | 22(1.48) | 11(1.31) | 12(3.89) | 6(4.54) | 20(3.60) | 32(2.57) | 30(2.81) | 39(2.50) | 4(0.97) | 34(0.90) | 28(0.88) | 25(0.54) | 29(0.52) | 11(0.96) | 19(0.98) | 43(0.87) | 36(0.87) | 12(0.71) | 11(0.98) | 1(1.00) | 7(0.97) | 23(0.92) | 22(0.90) | 39(0.43) | 32(0.36) | 27(0.92) | 24(1.45) | 36(0.10) | 25(1.31) | 15(1.13) | 13(3.86) | 8(4.51) | 20(3.58) | 31(2.51) | 31(2.73) | 37(2.46) | 2(0.97) | 38(0.86) | 32(0.85) | 26(0.56) | 27(0.51) | 7(0.95) | 16(0.98) | 44(0.82) | 40(0.83) | 11(0.74) | 15(0.98) | 2(0.99) | 5(0.97) | 27(0.90) | 25(0.87) | 38(0.45) | 29(0.35) | 27(0.92) | 23(1.34) | 34(0.05) | 25(1.31) | 15(1.14) | 9(1.69) | 41(1.66) | 3(1.72) | 11(1.61) | 33(1.58) | 3(1.66) | 11(0.86) | 9(0.83) | 36(0.86) | 42(0.81) | 3(0.87) | 5(0.86) | 13(2.88) | 23(1.15) | 5(3.77) | 13(2.85) | 12(1.46%) | 22(1.59) | 37(1.53) | 3(1.67) | 25(1.35) | 37(1.23) | 12(1.53) | 12(0.85) | 24(0.73) | 40(0.86) | 37(0.67) | 1(0.85) | 4(0.82) | 30(0.60) | 23(0.16) | 19(0.61) | 18(0.82) | 9(1.76%) | 32(1.56) | 43(1.46) | 3(1.68) | 36(1.38) | 39(1.27) | 7(1.54) | 17(0.84) | 37(0.72) | 39(0.82) | 45(0.64) | 3(0.86) | 5(0.82) | 19(1.52) | 33(0.18) | 17(1.48) | 22(1.08) | 10(2.03%) |
| minimap2-svision | 40(2.82) | 41(3.13) | 39(2.76) | 34(2.32) | 36(2.30) | 35(2.49) | 26(0.96) | 44(0.77) | 45(0.75) | 28(0.51) | 17(0.57) | 47(0.00) | 40(0.95) | 46(0.66) | 46(0.62) | 25(0.63) | 26(0.90) | 47(0.00) | 3(0.97) | 6(0.93) | 4(0.93) | 33(0.43) | 19(0.42) | 47(0.00) | 27(1.03) | 31(0.67) | 38(0.92) | 7(1.49) | 39(2.83) | 45(3.12) | 38(2.82) | 35(2.38) | 36(2.38) | 36(2.60) | 38(0.95) | 45(0.76) | 45(0.73) | 29(0.52) | 16(0.59) | 47(0.00) | 44(0.93) | 49(0.64) | 49(0.59) | 24(0.62) | 32(0.93) | 47(0.00) | 1(0.97) | 3(0.96) | 3(0.95) | 32(0.45) | 19(0.43) | 47(0.00) | 23(1.52) | 16(0.23) | 34(0.92) | 16(1.09) | 38(2.86) | 44(3.14) | 35(2.88) | 34(2.38) | 36(2.35) | 32(2.66) | 33(0.95) | 44(0.73) | 44(0.70) | 20(0.61) | 20(0.57) | 46(0.00) | 44(0.93) | 49(0.59) | 49(0.55) | 22(0.68) | 30(0.93) | 46(0.00) | 1(0.97) | 5(0.95) | 5(0.94) | 23(0.55) | 22(0.41) | 46(0.00) | 21(1.40) | 19(0.16) | 36(0.82) | 16(1.06) | 11(1.68) | 43(1.65) | 4(1.72) | 12(1.61) | 34(1.57) | 4(1.65) | 21(0.85) | 10(0.83) | 39(0.85) | 46(0.80) | 4(0.86) | 3(0.86) | 26(2.20) | 33(0.80) | 23(2.83) | 30(1.10) | 9(1.43%) | 31(1.54) | 40(1.45) | 2(1.67) | 33(1.28) | 40(1.13) | 14(1.52) | 22(0.84) | 31(0.70) | 43(0.85) | 40(0.60) | 4(0.84) | 2(0.84) | 40(0.35) | 44(0.13) | 23(0.54) | 26(0.57) | 6(1.74%) | 36(1.53) | 46(1.42) | 4(1.68) | 39(1.33) | 41(1.20) | 15(1.53) | 25(0.83) | 43(0.70) | 41(0.81) | 46(0.61) | 5(0.86) | 4(0.82) | 33(1.02) | 29(0.23) | 26(1.25) | 27(0.73) | 4(1.86%) |
| ngmlr-cutesv | 11(3.86) | 22(4.18) | 13(3.72) | 10(3.34) | 12(3.37) | 8(3.36) | 14(0.97) | 20(0.93) | 28(0.86) | 38(0.44) | 25(0.55) | 7(0.97) | 1(1.00) | 4(0.99) | 35(0.86) | 40(0.38) | 34(0.85) | 10(0.96) | 35(0.94) | 37(0.88) | 27(0.87) | 26(0.53) | 23(0.41) | 3(0.97) | 5(1.91) | 49(0.25) | 53(0.50) | 50(0.22) | 7(3.94) | 15(4.25) | 5(3.87) | 8(3.38) | 12(3.40) | 3(3.47) | 22(0.96) | 23(0.94) | 32(0.88) | 33(0.50) | 22(0.58) | 6(0.96) | 5(0.99) | 4(0.99) | 37(0.87) | 37(0.40) | 38(0.90) | 10(0.96) | 40(0.94) | 35(0.89) | 29(0.88) | 13(0.65) | 20(0.43) | 8(0.97) | 10(2.17) | 40(0.07) | 53(0.42) | 40(0.45) | 14(3.85) | 27(4.14) | 6(3.79) | 8(3.34) | 16(3.33) | 5(3.43) | 25(0.96) | 21(0.93) | 27(0.87) | 38(0.44) | 21(0.57) | 9(0.95) | 8(0.99) | 8(0.98) | 36(0.86) | 44(0.36) | 38(0.88) | 12(0.93) | 37(0.93) | 33(0.88) | 26(0.87) | 17(0.59) | 19(0.42) | 5(0.97) | 11(2.00) | 41(0.03) | 53(0.44) | 45(0.30) | 19(1.67) | 3(1.82) | 32(1.55) | 20(1.58) | 3(1.78) | 29(1.43) | 9(0.87) | 29(0.80) | 2(0.92) | 4(0.90) | 26(0.82) | 38(0.73) | 37(1.78) | 45(0.60) | 35(0.58) | 53(0.17) | 24(1.74%) | 33(1.37) | 1(1.79) | 37(1.25) | 30(1.30) | 4(1.69) | 34(1.18) | 36(0.71) | 33(0.66) | 1(0.92) | 2(0.87) | 38(0.64) | 39(0.60) | 37(0.43) | 25(0.16) | 42(0.32) | 51(0.18) | 32(2.82%) | 12(1.66) | 4(1.75) | 21(1.57) | 11(1.57) | 6(1.67) | 19(1.48) | 7(0.86) | 14(0.80) | 7(0.89) | 9(0.86) | 22(0.83) | 27(0.75) | 25(1.29) | 43(0.11) | 42(0.40) | 51(0.23) | 39(2.98%) |
| ngmlr-cutesv2 | 12(3.84) | 12(4.30) | 17(3.60) | 13(3.26) | 13(3.36) | 13(3.20) | 19(0.97) | 27(0.91) | 30(0.86) | 39(0.44) | 21(0.56) | 6(0.97) | 2(0.99) | 19(0.96) | 34(0.86) | 36(0.44) | 21(0.93) | 9(0.97) | 37(0.94) | 40(0.86) | 29(0.86) | 34(0.43) | 25(0.40) | 5(0.97) | 2(1.96) | 42(0.36) | 51(0.54) | 35(0.48) | 10(3.90) | 9(4.39) | 19(3.64) | 12(3.32) | 11(3.46) | 11(3.23) | 11(0.97) | 22(0.94) | 31(0.88) | 38(0.44) | 18(0.59) | 5(0.97) | 4(0.99) | 3(0.99) | 35(0.88) | 35(0.47) | 23(0.97) | 9(0.97) | 33(0.94) | 34(0.90) | 27(0.88) | 40(0.41) | 21(0.42) | 9(0.97) | 11(2.14) | 39(0.08) | 52(0.44) | 32(0.61) | 11(3.88) | 9(4.32) | 16(3.66) | 11(3.31) | 12(3.40) | 15(3.26) | 19(0.96) | 19(0.93) | 24(0.87) | 36(0.46) | 18(0.58) | 8(0.95) | 7(0.99) | 9(0.98) | 35(0.87) | 32(0.46) | 27(0.95) | 10(0.94) | 34(0.94) | 32(0.88) | 24(0.87) | 39(0.45) | 21(0.42) | 6(0.97) | 10(2.00) | 39(0.03) | 52(0.45) | 30(0.56) | 18(1.67) | 9(1.76) | 24(1.59) | 19(1.59) | 7(1.72) | 26(1.47) | 8(0.87) | 30(0.80) | 8(0.90) | 19(0.86) | 18(0.83) | 34(0.75) | 38(1.62) | 41(0.66) | 39(0.54) | 46(0.33) | 37(2.33%) | 34(1.36) | 2(1.79) | 38(1.24) | 32(1.30) | 1(1.70) | 35(1.18) | 37(0.70) | 34(0.66) | 3(0.92) | 4(0.86) | 39(0.64) | 41(0.60) | 36(0.44) | 27(0.16) | 41(0.33) | 44(0.23) | 35(2.85%) | 9(1.66) | 2(1.76) | 20(1.57) | 10(1.57) | 1(1.69) | 20(1.47) | 5(0.86) | 15(0.80) | 5(0.89) | 7(0.86) | 21(0.83) | 28(0.75) | 24(1.29) | 41(0.11) | 41(0.40) | 49(0.25) | 24(2.54%) |
| ngmlr-debreak | 27(3.44) | 35(3.73) | 22(3.48) | 20(3.07) | 20(3.12) | 10(3.32) | 22(0.96) | 18(0.93) | 5(0.93) | 6(0.69) | 13(0.59) | 40(0.26) | 27(0.97) | 11(0.97) | 10(0.97) | 27(0.60) | 10(0.99) | 40(0.20) | 17(0.96) | 32(0.89) | 11(0.90) | 2(0.82) | 20(0.42) | 43(0.39) | 8(1.85) | 38(0.47) | 49(0.66) | 33(0.50) | 28(3.51) | 34(3.76) | 21(3.55) | 20(3.14) | 21(3.16) | 7(3.39) | 5(0.97) | 20(0.94) | 4(0.95) | 5(0.69) | 10(0.62) | 40(0.28) | 17(0.98) | 5(0.99) | 10(0.98) | 25(0.60) | 18(0.97) | 41(0.21) | 9(0.96) | 32(0.90) | 11(0.92) | 5(0.80) | 12(0.45) | 39(0.43) | 12(2.02) | 38(0.08) | 48(0.63) | 33(0.60) | 28(3.45) | 33(3.71) | 22(3.51) | 22(3.09) | 21(3.12) | 8(3.36) | 6(0.97) | 15(0.94) | 3(0.95) | 9(0.68) | 10(0.61) | 40(0.24) | 20(0.98) | 6(0.99) | 8(0.97) | 29(0.60) | 17(0.98) | 41(0.17) | 7(0.97) | 25(0.90) | 6(0.92) | 2(0.78) | 11(0.44) | 39(0.41) | 12(1.75) | 37(0.04) | 46(0.62) | 31(0.55) | 32(1.62) | 11(1.75) | 35(1.52) | 35(1.50) | 18(1.65) | 39(1.39) | 22(0.85) | 38(0.77) | 16(0.88) | 13(0.87) | 23(0.83) | 43(0.69) | 31(2.13) | 36(0.78) | 44(0.19) | 51(0.22) | 46(3.77%) | 38(1.30) | 28(1.66) | 41(1.22) | 36(1.21) | 17(1.53) | 37(1.14) | 41(0.69) | 39(0.61) | 25(0.89) | 24(0.78) | 41(0.64) | 44(0.58) | 39(0.38) | 39(0.13) | 40(0.33) | 37(0.36) | 46(3.49%) | 27(1.60) | 24(1.70) | 32(1.53) | 23(1.49) | 21(1.59) | 28(1.42) | 32(0.83) | 28(0.78) | 34(0.84) | 5(0.87) | 24(0.83) | 38(0.71) | 22(1.35) | 39(0.12) | 44(0.37) | 44(0.34) | 46(3.48%) |
| ngmlr-delly | 48(1.87) | 49(1.95) | 53(1.80) | 45(1.76) | 41(1.73) | 48(1.78) | 30(0.96) | 24(0.92) | 33(0.85) | 48(0.00) | 51(0.00) | 48(0.00) | 20(0.97) | 8(0.98) | 3(0.98) | 48(0.00) | 51(0.00) | 48(0.00) | 34(0.94) | 39(0.86) | 47(0.75) | 48(0.00) | 51(0.00) | 48(0.00) | 38(0.21) | 7(1.93) | 16(1.82) | 24(0.92) | 49(1.90) | 50(1.96) | 53(1.84) | 45(1.80) | 43(1.77) | 49(1.82) | 34(0.96) | 24(0.94) | 33(0.87) | 48(0.00) | 51(0.00) | 48(0.00) | 30(0.97) | 7(0.99) | 2(0.99) | 48(0.00) | 51(0.00) | 48(0.00) | 32(0.95) | 36(0.89) | 47(0.78) | 48(0.00) | 51(0.00) | 48(0.00) | 41(0.15) | 8(0.94) | 9(2.02) | 21(1.02) | 48(1.89) | 50(1.96) | 51(1.82) | 45(1.79) | 43(1.78) | 47(1.80) | 28(0.96) | 22(0.93) | 29(0.86) | 48(0.00) | 51(0.00) | 47(0.00) | 23(0.97) | 5(0.99) | 2(0.99) | 48(0.00) | 51(0.00) | 47(0.00) | 28(0.94) | 34(0.88) | 43(0.77) | 48(0.00) | 51(0.00) | 47(0.00) | 43(0.19) | 6(1.36) | 9(2.00) | 19(1.03) | 40(1.60) | 7(1.79) | 43(1.46) | 29(1.53) | 8(1.71) | 38(1.40) | 28(0.84) | 43(0.76) | 10(0.90) | 6(0.89) | 36(0.80) | 47(0.66) | 45(0.58) | 19(1.17) | 10(3.17) | 4(4.49) | 3(1.20%) | 40(1.27) | 19(1.69) | 42(1.17) | 40(1.13) | 20(1.48) | 41(1.05) | 43(0.69) | 41(0.59) | 15(0.90) | 21(0.79) | 43(0.63) | 47(0.54) | 6(1.30) | 36(0.14) | 6(1.60) | 3(2.53) | 20(2.23%) | 42(1.48) | 1(1.76) | 42(1.35) | 32(1.40) | 4(1.67) | 38(1.27) | 38(0.77) | 41(0.71) | 17(0.87) | 1(0.89) | 41(0.73) | 46(0.62) | 42(0.58) | 8(0.51) | 5(2.72) | 4(3.97) | 38(2.97%) |
| ngmlr-nanosv | 43(2.22) | 44(3.04) | 45(2.20) | 41(1.79) | 37(2.22) | 44(1.95) | 47(0.20) | 46(0.72) | 46(0.68) | 49(0.00) | 40(0.39) | 19(0.91) | 51(0.69) | 48(0.61) | 48(0.58) | 49(0.00) | 31(0.86) | 22(0.87) | 47(0.12) | 35(0.88) | 36(0.83) | 49(0.00) | 41(0.25) | 21(0.95) | 44(0.16) | 21(1.05) | 40(0.91) | 28(0.67) | 43(2.19) | 46(3.03) | 45(2.20) | 46(1.75) | 37(2.20) | 45(1.94) | 49(0.18) | 46(0.70) | 46(0.66) | 49(0.00) | 41(0.41) | 19(0.91) | 53(0.69) | 50(0.57) | 50(0.55) | 49(0.00) | 39(0.89) | 22(0.87) | 47(0.10) | 38(0.89) | 39(0.84) | 49(0.00) | 41(0.26) | 19(0.95) | 35(0.31) | 11(0.29) | 35(0.84) | 25(0.92) | 52(1.33) | 47(3.01) | 53(1.19) | 48(1.16) | 39(2.24) | 48(1.08) | 51(0.08) | 49(0.26) | 50(0.24) | 49(0.00) | 47(0.05) | 13(0.94) | 53(0.67) | 50(0.55) | 50(0.54) | 49(0.00) | 39(0.86) | 13(0.93) | 51(0.04) | 49(0.17) | 50(0.15) | 49(0.00) | 47(0.03) | 20(0.95) | 47(0.14) | 13(0.19) | 40(0.77) | 27(0.72) | 47(0.83) | 50(1.31) | 49(0.83) | 46(0.71) | 45(1.18) | 46(0.73) | 48(0.13) | 49(0.70) | 50(0.66) | 50(0.65) | 48(0.07) | 32(0.76) | 39(0.91) | 21(1.16) | 40(0.53) | 38(0.56) | 18(1.56%) | 49(0.54) | 49(0.90) | 49(0.65) | 48(0.45) | 46(0.77) | 48(0.58) | 50(0.10) | 45(0.45) | 50(0.48) | 42(0.42) | 51(0.05) | 42(0.60) | 5(1.58) | 5(0.25) | 37(0.41) | 30(0.51) | 13(1.90%) | 47(0.72) | 47(1.07) | 49(0.81) | 46(0.59) | 44(0.92) | 48(0.69) | 47(0.15) | 46(0.57) | 49(0.59) | 48(0.48) | 47(0.09) | 35(0.72) | 39(0.79) | 10(0.36) | 34(0.68) | 33(0.57) | 12(2.11%) |
| ngmlr-nanovar | 26(3.60) | 18(4.19) | 28(3.34) | 9(3.36) | 2(3.78) | 14(3.20) | 45(0.92) | 39(0.84) | 39(0.81) | 35(0.45) | 35(0.45) | 12(0.95) | 36(0.97) | 25(0.94) | 28(0.91) | 38(0.42) | 27(0.89) | 8(0.97) | 45(0.87) | 48(0.75) | 49(0.74) | 31(0.49) | 36(0.30) | 23(0.93) | 36(0.22) | 22(0.90) | 33(1.05) | 14(1.27) | 25(3.66) | 14(4.26) | 27(3.39) | 7(3.38) | 2(3.83) | 15(3.19) | 45(0.93) | 38(0.87) | 40(0.85) | 36(0.45) | 38(0.47) | 12(0.95) | 24(0.97) | 29(0.97) | 28(0.93) | 36(0.43) | 33(0.92) | 7(0.97) | 45(0.88) | 48(0.79) | 48(0.77) | 29(0.47) | 38(0.31) | 22(0.93) | 39(0.23) | 27(0.16) | 30(1.09) | 9(1.42) | 24(3.66) | 15(4.25) | 26(3.42) | 4(3.43) | 2(3.86) | 12(3.27) | 44(0.92) | 36(0.86) | 35(0.83) | 34(0.47) | 36(0.46) | 6(0.95) | 30(0.97) | 22(0.97) | 25(0.93) | 35(0.42) | 32(0.91) | 3(0.98) | 44(0.88) | 45(0.77) | 45(0.75) | 28(0.53) | 34(0.30) | 24(0.93) | 40(0.24) | 28(0.08) | 30(1.02) | 10(1.26) | 43(1.59) | 17(1.74) | 42(1.47) | 40(1.46) | 20(1.62) | 40(1.34) | 27(0.84) | 44(0.75) | 9(0.90) | 29(0.84) | 37(0.80) | 46(0.68) | 42(0.61) | 27(1.09) | 34(0.60) | 36(0.68) | 26(1.80%) | 39(1.29) | 14(1.73) | 43(1.13) | 38(1.19) | 15(1.55) | 40(1.06) | 44(0.67) | 38(0.62) | 7(0.91) | 16(0.82) | 45(0.59) | 46(0.54) | 23(0.79) | 11(0.19) | 20(0.57) | 28(0.56) | 41(2.98%) | 31(1.56) | 8(1.74) | 39(1.42) | 29(1.43) | 22(1.58) | 37(1.31) | 33(0.83) | 33(0.74) | 2(0.90) | 21(0.84) | 39(0.77) | 45(0.65) | 48(0.38) | 22(0.28) | 38(0.56) | 31(0.66) | 36(2.88%) |
| ngmlr-pbsv | 14(3.81) | 2(4.70) | 24(3.44) | 14(3.21) | 6(3.65) | 20(3.03) | 36(0.95) | 30(0.90) | 24(0.87) | 27(0.53) | 29(0.52) | 18(0.91) | 35(0.97) | 6(0.98) | 16(0.94) | 3(0.90) | 14(0.97) | 20(0.87) | 39(0.94) | 43(0.82) | 41(0.81) | 39(0.37) | 32(0.35) | 19(0.96) | 48(0.14) | 4(2.30) | 12(1.91) | 6(2.01) | 17(3.85) | 2(4.64) | 25(3.51) | 14(3.25) | 7(3.62) | 21(3.10) | 36(0.95) | 31(0.92) | 23(0.89) | 28(0.53) | 30(0.52) | 18(0.92) | 33(0.97) | 10(0.99) | 25(0.94) | 2(0.83) | 17(0.97) | 17(0.88) | 36(0.94) | 41(0.86) | 36(0.85) | 42(0.39) | 31(0.36) | 17(0.96) | 46(0.09) | 4(1.91) | 12(1.86) | 2(2.38) | 19(3.75) | 2(4.57) | 24(3.48) | 17(3.17) | 9(3.53) | 22(3.08) | 34(0.95) | 26(0.91) | 20(0.89) | 29(0.53) | 26(0.52) | 25(0.84) | 36(0.97) | 4(0.99) | 21(0.94) | 1(0.90) | 18(0.98) | 28(0.74) | 30(0.94) | 39(0.85) | 32(0.84) | 44(0.37) | 28(0.35) | 9(0.96) | 50(0.11) | 4(1.68) | 14(1.85) | 4(2.32) | 45(1.53) | 22(1.73) | 45(1.38) | 41(1.32) | 41(1.44) | 42(1.23) | 40(0.82) | 48(0.70) | 18(0.88) | 24(0.84) | 40(0.78) | 49(0.60) | 2(3.31) | 14(1.22) | 2(5.89) | 22(2.44) | 36(2.24%) | 41(1.25) | 12(1.75) | 45(1.10) | 41(1.01) | 36(1.25) | 42(0.95) | 45(0.66) | 40(0.59) | 28(0.88) | 3(0.86) | 44(0.60) | 48(0.50) | 1(2.42) | 3(0.50) | 4(4.05) | 11(2.09) | 24(2.51%) | 39(1.50) | 14(1.72) | 43(1.34) | 40(1.27) | 34(1.40) | 41(1.17) | 37(0.80) | 42(0.70) | 18(0.87) | 15(0.85) | 40(0.74) | 47(0.60) | 4(2.81) | 4(0.57) | 4(5.14) | 13(2.19) | 11(2.06%) |
| ngmlr-picky | 42(2.23) | 36(3.63) | 42(2.38) | 50(0.94) | 49(1.46) | 50(0.98) | 48(0.18) | 50(0.22) | 50(0.37) | 9(0.67) | 23(0.56) | 32(0.60) | 45(0.90) | 34(0.92) | 42(0.75) | 26(0.62) | 41(0.76) | 37(0.43) | 48(0.10) | 50(0.13) | 50(0.24) | 6(0.73) | 13(0.44) | 1(0.98) | 50(0.07) | 51(0.24) | 35(1.00) | 51(0.21) | 42(2.24) | 35(3.72) | 41(2.41) | 50(0.91) | 49(1.44) | 50(0.98) | 47(0.18) | 50(0.24) | 50(0.39) | 12(0.64) | 20(0.58) | 32(0.59) | 40(0.96) | 28(0.97) | 42(0.79) | 28(0.57) | 43(0.80) | 38(0.42) | 49(0.10) | 50(0.14) | 50(0.26) | 6(0.73) | 9(0.46) | 1(0.98) | 51(0.06) | 46(0.03) | 32(1.00) | 48(0.27) | 42(2.21) | 35(3.64) | 40(2.42) | 49(0.93) | 49(1.46) | 49(1.02) | 47(0.19) | 50(0.24) | 49(0.38) | 13(0.64) | 19(0.58) | 32(0.57) | 42(0.95) | 29(0.96) | 42(0.77) | 31(0.56) | 43(0.77) | 38(0.40) | 48(0.10) | 50(0.13) | 49(0.25) | 4(0.75) | 7(0.46) | 1(0.98) | 37(0.29) | 50(0.01) | 32(0.92) | 51(0.22) | 50(0.38) | 46(1.63) | 50(0.22) | 50(0.14) | 48(0.56) | 50(0.08) | 47(0.14) | 50(0.24) | 47(0.71) | 1(0.92) | 47(0.08) | 50(0.14) | 50(0.28) | 52(0.10) | 33(1.71) | 42(0.37) | NA | 50(0.20) | 50(0.89) | 50(0.15) | 50(0.07) | 50(0.25) | 50(0.06) | 49(0.11) | 50(0.10) | 49(0.55) | 45(0.34) | 49(0.06) | 50(0.08) | 38(0.42) | 50(0.04) | 14(0.94) | 42(0.30) | NA | 50(0.35) | 45(1.45) | 50(0.21) | 50(0.13) | 50(0.49) | 50(0.07) | 48(0.13) | 50(0.23) | 50(0.56) | 2(0.89) | 48(0.08) | 50(0.13) | 50(0.26) | 9(0.49) | 19(1.33) | 43(0.35) | NA |
| ngmlr-sniffles | 15(3.78) | 27(4.08) | 2(3.88) | 40(1.86) | 48(1.46) | 25(2.85) | 39(0.95) | 35(0.88) | 29(0.86) | 22(0.62) | 28(0.52) | 25(0.81) | 16(0.98) | 13(0.97) | 23(0.92) | 33(0.47) | 23(0.93) | 26(0.73) | 42(0.92) | 46(0.80) | 42(0.80) | 1(0.88) | 30(0.36) | 27(0.91) | 31(0.63) | 23(0.88) | 29(1.15) | 43(0.33) | 15(3.86) | 27(4.16) | 2(3.94) | 44(1.81) | 51(1.38) | 26(2.87) | 31(0.96) | 32(0.91) | 25(0.89) | 13(0.63) | 25(0.55) | 24(0.81) | 18(0.98) | 8(0.99) | 23(0.94) | 32(0.50) | 28(0.96) | 28(0.73) | 39(0.94) | 46(0.84) | 38(0.84) | 1(0.86) | 27(0.39) | 28(0.91) | 31(0.80) | 22(0.19) | 26(1.19) | 46(0.30) | 50(1.66) | 39(3.31) | 52(1.22) | 53(0.64) | 53(0.99) | 53(0.53) | 45(0.52) | 48(0.50) | 48(0.49) | 45(0.39) | 44(0.24) | 48(0.00) | 12(0.98) | 7(0.99) | 23(0.94) | 41(0.38) | 24(0.96) | 48(0.00) | 45(0.36) | 48(0.34) | 48(0.34) | 43(0.39) | 45(0.14) | 48(0.00) | 29(0.75) | 15(0.17) | 28(1.15) | 33(0.53) | 44(1.57) | 8(1.76) | 44(1.43) | 47(0.58) | 47(0.58) | 49(0.59) | 42(0.81) | 42(0.76) | 34(0.86) | 3(0.90) | 44(0.77) | 48(0.66) | 17(2.64) | 28(1.08) | 46(0.12) | 33(0.76) | 49(5.23%) | 45(1.00) | 42(1.22) | 44(1.12) | 49(0.43) | 48(0.43) | 49(0.51) | 42(0.69) | 48(0.31) | 34(0.88) | 46(0.34) | 42(0.63) | 49(0.49) | 14(1.06) | 22(0.17) | 46(0.15) | 52(0.18) | 1(0.11%) | 45(1.30) | 37(1.59) | 44(1.25) | 47(0.56) | 47(0.61) | 49(0.59) | 45(0.64) | 44(0.66) | 44(0.70) | 3(0.88) | 44(0.70) | 49(0.56) | 14(1.77) | 20(0.30) | 45(0.13) | 52(0.23) | 2(1.45%) |
| ngmlr-sniffles2 | 23(3.66) | 20(4.18) | 21(3.57) | 21(2.95) | 23(3.05) | 21(3.02) | 29(0.96) | 26(0.91) | 21(0.88) | 17(0.63) | 38(0.42) | 29(0.73) | 13(0.98) | 24(0.95) | 19(0.94) | 23(0.64) | 12(0.97) | 29(0.64) | 40(0.93) | 36(0.88) | 34(0.84) | 14(0.63) | 39(0.27) | 32(0.86) | 19(1.33) | 24(0.81) | 34(1.03) | 45(0.31) | 21(3.75) | 21(4.21) | 14(3.69) | 22(3.11) | 20(3.19) | 14(3.20) | 26(0.96) | 26(0.93) | 19(0.91) | 7(0.69) | 39(0.45) | 26(0.72) | 12(0.98) | 30(0.97) | 18(0.96) | 19(0.67) | 20(0.97) | 29(0.62) | 37(0.94) | 33(0.90) | 33(0.86) | 8(0.71) | 39(0.29) | 32(0.86) | 17(1.73) | 20(0.20) | 31(1.06) | 44(0.34) | 22(3.71) | 19(4.22) | 17(3.63) | 20(3.11) | 20(3.21) | 18(3.18) | 23(0.96) | 23(0.93) | 18(0.90) | 10(0.67) | 38(0.44) | 26(0.71) | 11(0.98) | 24(0.97) | 15(0.95) | 19(0.70) | 20(0.97) | 30(0.60) | 36(0.94) | 30(0.89) | 31(0.85) | 12(0.65) | 38(0.29) | 30(0.86) | 19(1.43) | 22(0.14) | 29(1.06) | 42(0.37) | 33(1.62) | 37(1.69) | 29(1.56) | 36(1.49) | 28(1.59) | 33(1.41) | 19(0.86) | 40(0.76) | 12(0.89) | 44(0.80) | 22(0.83) | 36(0.73) | 19(2.55) | 29(1.02) | 45(0.13) | 37(0.63) | 28(1.82%) | 36(1.33) | 18(1.70) | 39(1.24) | 34(1.23) | 13(1.57) | 36(1.16) | 39(0.70) | 37(0.63) | 12(0.91) | 19(0.79) | 40(0.64) | 43(0.59) | 12(1.11) | 14(0.18) | 45(0.18) | 48(0.20) | 26(2.64%) | 20(1.63) | 23(1.71) | 24(1.56) | 22(1.50) | 20(1.59) | 24(1.43) | 11(0.85) | 27(0.78) | 9(0.88) | 33(0.82) | 23(0.83) | 31(0.74) | 12(1.93) | 21(0.28) | 46(0.13) | 35(0.50) | 18(2.35%) |
| ngmlr-svim | 2(4.12) | 5(4.57) | 5(3.88) | 26(2.79) | 25(2.93) | 31(2.71) | 24(0.96) | 31(0.89) | 37(0.84) | 1(0.81) | 26(0.53) | 13(0.93) | 17(0.98) | 26(0.94) | 37(0.83) | 4(0.88) | 33(0.86) | 16(0.90) | 28(0.95) | 41(0.85) | 32(0.85) | 5(0.75) | 28(0.38) | 20(0.95) | 25(1.10) | 30(0.67) | 50(0.63) | 27(0.85) | 1(4.19) | 5(4.58) | 1(4.00) | 24(2.87) | 27(2.96) | 27(2.85) | 17(0.97) | 29(0.93) | 36(0.86) | 1(0.81) | 26(0.55) | 15(0.94) | 16(0.98) | 22(0.98) | 40(0.85) | 3(0.79) | 37(0.91) | 15(0.92) | 24(0.95) | 40(0.88) | 31(0.87) | 4(0.82) | 26(0.39) | 18(0.95) | 28(1.20) | 29(0.13) | 49(0.55) | 28(0.71) | 2(4.11) | 7(4.53) | 2(3.92) | 24(2.88) | 25(3.05) | 28(2.77) | 18(0.96) | 25(0.92) | 31(0.86) | 1(0.81) | 25(0.54) | 20(0.88) | 18(0.98) | 18(0.97) | 38(0.85) | 2(0.88) | 37(0.89) | 25(0.81) | 22(0.95) | 35(0.87) | 29(0.86) | 5(0.75) | 26(0.39) | 16(0.96) | 28(1.06) | 31(0.06) | 49(0.60) | 28(0.72) | 28(1.64) | 13(1.75) | 31(1.55) | 38(1.48) | 31(1.59) | 36(1.40) | 10(0.86) | 36(0.78) | 15(0.88) | 17(0.87) | 11(0.84) | 41(0.71) | 18(2.59) | 20(1.17) | 41(0.53) | 35(0.71) | 5(1.31%) | 35(1.34) | 7(1.76) | 40(1.23) | 37(1.19) | 24(1.46) | 39(1.12) | 38(0.70) | 35(0.64) | 21(0.90) | 6(0.86) | 36(0.65) | 45(0.57) | 10(1.13) | 20(0.17) | 39(0.35) | 27(0.57) | 11(1.86%) | 18(1.63) | 20(1.71) | 23(1.56) | 28(1.44) | 31(1.46) | 30(1.42) | 8(0.85) | 29(0.77) | 22(0.86) | 18(0.85) | 10(0.85) | 37(0.72) | 18(1.61) | 32(0.20) | 40(0.44) | 36(0.50) | 13(2.22%) |
| ngmlr-svision | 35(3.21) | 38(3.42) | 32(3.14) | 29(2.63) | 33(2.49) | 24(2.89) | 31(0.96) | 34(0.88) | 38(0.82) | 2(0.79) | 15(0.58) | 49(0.00) | 41(0.95) | 41(0.84) | 43(0.75) | 11(0.76) | 32(0.86) | 49(0.00) | 5(0.97) | 10(0.92) | 10(0.90) | 3(0.82) | 17(0.43) | 49(0.00) | 24(1.12) | 35(0.56) | 52(0.50) | 29(0.59) | 33(3.29) | 39(3.51) | 30(3.22) | 28(2.73) | 34(2.61) | 25(2.98) | 24(0.96) | 28(0.93) | 37(0.86) | 3(0.78) | 9(0.62) | 49(0.00) | 42(0.96) | 39(0.91) | 41(0.80) | 9(0.73) | 35(0.91) | 49(0.00) | 2(0.97) | 9(0.94) | 8(0.92) | 3(0.84) | 8(0.47) | 49(0.00) | 27(1.30) | 13(0.27) | 50(0.50) | 38(0.45) | 31(3.21) | 37(3.50) | 31(3.07) | 30(2.61) | 34(2.53) | 26(2.77) | 26(0.96) | 29(0.90) | 33(0.84) | 3(0.75) | 12(0.60) | 49(0.00) | 41(0.95) | 41(0.88) | 41(0.78) | 7(0.77) | 34(0.90) | 49(0.00) | 12(0.96) | 11(0.93) | 12(0.91) | 6(0.73) | 9(0.46) | 49(0.00) | 27(1.09) | 18(0.17) | 50(0.50) | 32(0.53) | 26(1.65) | 14(1.74) | 25(1.58) | 32(1.52) | 23(1.61) | 28(1.44) | 14(0.86) | 32(0.79) | 17(0.88) | 18(0.86) | 14(0.84) | 35(0.74) | 36(1.82) | 39(0.74) | 36(0.56) | 39(0.49) | 7(1.33%) | 37(1.33) | 23(1.68) | 36(1.25) | 39(1.16) | 31(1.37) | 38(1.14) | 40(0.70) | 36(0.63) | 26(0.89) | 20(0.79) | 37(0.65) | 40(0.60) | 31(0.59) | 47(0.12) | 44(0.29) | 43(0.26) | 19(2.14%) | 19(1.63) | 27(1.69) | 19(1.58) | 30(1.42) | 32(1.43) | 25(1.42) | 13(0.85) | 25(0.78) | 20(0.87) | 32(0.83) | 12(0.84) | 30(0.74) | 26(1.20) | 27(0.24) | 39(0.45) | 47(0.30) | 16(2.26%) |
| pbmm2-cutesv | 6(3.98) | 23(4.18) | 1(3.93) | 7(3.41) | 14(3.34) | 2(3.53) | 12(0.97) | 7(0.94) | 7(0.92) | 32(0.49) | 12(0.60) | 5(0.97) | 10(0.98) | 10(0.97) | 22(0.93) | 39(0.40) | 36(0.84) | 7(0.97) | 25(0.95) | 16(0.92) | 7(0.92) | 15(0.63) | 8(0.47) | 7(0.97) | 12(1.69) | 44(0.30) | 37(0.93) | 47(0.27) | 5(3.98) | 16(4.25) | 4(3.90) | 6(3.40) | 15(3.36) | 2(3.49) | 18(0.97) | 10(0.96) | 7(0.94) | 37(0.44) | 6(0.64) | 1(0.97) | 14(0.98) | 13(0.99) | 17(0.96) | 39(0.36) | 30(0.94) | 4(0.97) | 28(0.95) | 14(0.93) | 7(0.93) | 17(0.57) | 5(0.48) | 2(0.97) | 19(1.71) | 35(0.10) | 40(0.78) | 45(0.33) | 6(3.96) | 20(4.20) | 3(3.91) | 7(3.39) | 15(3.33) | 1(3.50) | 22(0.96) | 13(0.94) | 12(0.93) | 33(0.47) | 7(0.62) | 2(0.97) | 14(0.98) | 16(0.97) | 20(0.94) | 39(0.39) | 36(0.89) | 5(0.97) | 33(0.94) | 17(0.92) | 9(0.91) | 15(0.61) | 4(0.47) | 2(0.97) | 16(1.49) | 38(0.04) | 39(0.80) | 46(0.29) | 4(1.71) | 1(1.82) | 19(1.62) | 2(1.66) | 2(1.79) | 15(1.56) | 3(0.88) | 7(0.83) | 1(0.92) | 5(0.90) | 17(0.83) | 25(0.79) | 27(2.19) | 44(0.60) | 18(2.98) | 45(0.34) | 8(1.39%) | 1(1.70) | 3(1.77) | 5(1.64) | 1(1.63) | 3(1.69) | 1(1.58) | 1(0.87) | 1(0.83) | 2(0.92) | 11(0.85) | 8(0.83) | 7(0.81) | 35(0.49) | 30(0.15) | 33(0.48) | 53(0.18) | 30(2.77%) | 2(1.70) | 6(1.74) | 7(1.66) | 1(1.63) | 3(1.68) | 3(1.59) | 2(0.87) | 1(0.83) | 6(0.89) | 14(0.85) | 7(0.85) | 8(0.81) | 17(1.62) | 38(0.13) | 21(1.32) | 41(0.36) | 22(2.47%) |
| pbmm2-cutesv2 | 9(3.92) | 19(4.18) | 8(3.84) | 8(3.38) | 15(3.34) | 6(3.47) | 20(0.97) | 23(0.92) | 12(0.91) | 36(0.45) | 8(0.62) | 2(0.97) | 11(0.98) | 28(0.94) | 24(0.92) | 41(0.38) | 25(0.91) | 6(0.97) | 27(0.95) | 20(0.91) | 12(0.90) | 25(0.55) | 9(0.47) | 2(0.97) | 11(1.73) | 40(0.39) | 39(0.92) | 19(1.08) | 6(3.96) | 12(4.28) | 6(3.85) | 5(3.40) | 13(3.39) | 4(3.45) | 13(0.97) | 7(0.96) | 6(0.95) | 40(0.42) | 4(0.65) | 2(0.97) | 13(0.98) | 15(0.99) | 15(0.97) | 42(0.35) | 13(0.98) | 5(0.97) | 25(0.95) | 12(0.93) | 6(0.93) | 25(0.51) | 6(0.48) | 3(0.97) | 18(1.71) | 30(0.12) | 38(0.78) | 8(1.49) | 8(3.95) | 17(4.24) | 5(3.85) | 6(3.40) | 13(3.38) | 4(3.47) | 21(0.96) | 11(0.95) | 8(0.93) | 40(0.44) | 4(0.63) | 1(0.97) | 15(0.98) | 15(0.97) | 17(0.95) | 42(0.37) | 29(0.95) | 4(0.97) | 29(0.94) | 15(0.92) | 8(0.91) | 24(0.55) | 5(0.47) | 3(0.97) | 17(1.49) | 36(0.04) | 37(0.80) | 12(1.16) | 1(1.72) | 15(1.74) | 5(1.70) | 1(1.67) | 9(1.69) | 5(1.64) | 1(0.88) | 2(0.84) | 6(0.91) | 31(0.84) | 7(0.86) | 9(0.84) | 32(2.01) | 40(0.68) | 21(2.88) | 10(2.92) | 31(2.06%) | 2(1.69) | 5(1.77) | 6(1.63) | 2(1.63) | 2(1.70) | 3(1.57) | 2(0.87) | 3(0.82) | 4(0.92) | 12(0.85) | 12(0.83) | 8(0.81) | 34(0.49) | 33(0.15) | 31(0.49) | 14(1.02) | 36(2.85%) | 1(1.70) | 5(1.75) | 8(1.66) | 2(1.63) | 2(1.68) | 5(1.58) | 1(0.87) | 2(0.83) | 4(0.90) | 16(0.85) | 8(0.85) | 9(0.81) | 16(1.62) | 36(0.14) | 20(1.32) | 17(1.42) | 8(2.02%) |
| pbmm2-debreak | 22(3.68) | 24(4.14) | 23(3.45) | 5(3.42) | 5(3.66) | 9(3.34) | 18(0.97) | 3(0.95) | 2(0.95) | 7(0.69) | 11(0.61) | 36(0.46) | 31(0.97) | 20(0.96) | 13(0.96) | 17(0.70) | 7(0.99) | 36(0.51) | 12(0.96) | 2(0.95) | 3(0.94) | 7(0.69) | 15(0.44) | 42(0.42) | 15(1.54) | 34(0.57) | 19(1.52) | 38(0.46) | 22(3.72) | 28(4.15) | 26(3.50) | 3(3.47) | 5(3.71) | 8(3.39) | 7(0.97) | 1(0.97) | 1(0.96) | 6(0.69) | 8(0.62) | 36(0.47) | 25(0.97) | 17(0.98) | 13(0.97) | 15(0.69) | 9(0.99) | 36(0.52) | 3(0.97) | 1(0.96) | 2(0.95) | 9(0.69) | 13(0.45) | 38(0.43) | 22(1.55) | 32(0.12) | 23(1.37) | 37(0.46) | 23(3.70) | 26(4.14) | 25(3.47) | 3(3.47) | 4(3.73) | 7(3.37) | 11(0.97) | 1(0.97) | 1(0.96) | 8(0.69) | 9(0.61) | 35(0.46) | 33(0.97) | 13(0.98) | 9(0.97) | 21(0.69) | 8(1.00) | 36(0.51) | 6(0.97) | 1(0.96) | 2(0.94) | 9(0.69) | 13(0.44) | 38(0.42) | 24(1.33) | 32(0.05) | 23(1.45) | 39(0.43) | 15(1.68) | 30(1.70) | 12(1.65) | 16(1.59) | 25(1.61) | 12(1.59) | 17(0.86) | 17(0.82) | 27(0.87) | 35(0.83) | 12(0.84) | 16(0.81) | 20(2.50) | 30(0.81) | 42(0.47) | 43(0.35) | 45(3.69%) | 19(1.59) | 34(1.58) | 13(1.62) | 15(1.47) | 26(1.44) | 10(1.54) | 17(0.85) | 21(0.74) | 31(0.88) | 33(0.70) | 13(0.82) | 17(0.80) | 29(0.68) | 46(0.12) | 35(0.43) | 41(0.31) | 29(2.77%) | 13(1.65) | 31(1.65) | 9(1.66) | 12(1.55) | 25(1.55) | 6(1.56) | 20(0.83) | 4(0.82) | 37(0.83) | 31(0.83) | 11(0.84) | 6(0.81) | 15(1.63) | 37(0.14) | 36(0.64) | 37(0.46) | 32(2.77%) |
| pbmm2-delly | 47(1.90) | 51(1.94) | 52(1.85) | 44(1.77) | 44(1.72) | 47(1.83) | 23(0.96) | 14(0.93) | 26(0.87) | 50(0.00) | 52(0.00) | 50(0.00) | 24(0.97) | 14(0.97) | 8(0.97) | 50(0.00) | 52(0.00) | 50(0.00) | 19(0.96) | 25(0.90) | 44(0.79) | 50(0.00) | 52(0.00) | 50(0.00) | 40(0.20) | 8(1.93) | 17(1.82) | 26(0.88) | 47(1.92) | 51(1.96) | 51(1.89) | 42(1.82) | 44(1.77) | 47(1.88) | 20(0.97) | 12(0.96) | 24(0.89) | 50(0.00) | 52(0.00) | 50(0.00) | 31(0.97) | 11(0.99) | 4(0.98) | 50(0.00) | 52(0.00) | 50(0.00) | 12(0.96) | 19(0.93) | 42(0.82) | 50(0.00) | 52(0.00) | 50(0.00) | 43(0.14) | 5(1.00) | 8(2.05) | 20(1.04) | 46(1.91) | 51(1.95) | 50(1.88) | 44(1.82) | 46(1.77) | 46(1.86) | 17(0.97) | 9(0.95) | 21(0.88) | 50(0.00) | 52(0.00) | 50(0.00) | 27(0.97) | 10(0.98) | 5(0.98) | 50(0.00) | 52(0.00) | 50(0.00) | 16(0.96) | 18(0.92) | 38(0.81) | 50(0.00) | 52(0.00) | 50(0.00) | 41(0.20) | 8(1.33) | 10(1.99) | 21(0.98) | 34(1.62) | 10(1.76) | 38(1.50) | 27(1.54) | 11(1.68) | 31(1.43) | 32(0.84) | 37(0.77) | 11(0.89) | 12(0.87) | 35(0.80) | 42(0.70) | 46(0.57) | 18(1.17) | 11(3.16) | 6(4.41) | 4(1.24%) | 27(1.57) | 30(1.64) | 26(1.51) | 22(1.40) | 22(1.47) | 28(1.36) | 21(0.84) | 28(0.72) | 20(0.90) | 30(0.75) | 27(0.80) | 30(0.71) | 7(1.23) | 40(0.13) | 5(1.62) | 4(2.46) | 17(2.10%) | 21(1.62) | 10(1.73) | 28(1.54) | 13(1.54) | 11(1.64) | 21(1.46) | 23(0.83) | 17(0.79) | 24(0.86) | 6(0.87) | 28(0.81) | 33(0.73) | 41(0.58) | 7(0.52) | 7(2.72) | 6(3.68) | 34(2.86%) |
| pbmm2-nanosv | 50(1.57) | 47(2.32) | 44(2.31) | 48(1.23) | 45(1.66) | 43(1.98) | 46(0.23) | 47(0.68) | 47(0.66) | 51(0.00) | 37(0.43) | 41(0.23) | 49(0.76) | 49(0.54) | 49(0.52) | 51(0.00) | 28(0.89) | 41(0.13) | 46(0.13) | 9(0.92) | 23(0.88) | 51(0.00) | 37(0.29) | 12(0.97) | 46(0.16) | 9(1.46) | 27(1.29) | 15(1.24) | 51(1.57) | 49(2.38) | 44(2.33) | 49(1.21) | 46(1.70) | 43(2.00) | 48(0.18) | 47(0.68) | 47(0.66) | 51(0.00) | 35(0.48) | 41(0.23) | 50(0.75) | 51(0.53) | 51(0.53) | 51(0.00) | 27(0.96) | 42(0.13) | 48(0.10) | 11(0.94) | 25(0.89) | 51(0.00) | 35(0.32) | 7(0.97) | 48(0.08) | 9(0.33) | 20(1.45) | 7(1.49) | 41(2.21) | 45(3.06) | 42(2.30) | 41(1.83) | 37(2.31) | 41(2.08) | 48(0.18) | 45(0.66) | 45(0.64) | 51(0.00) | 35(0.46) | 19(0.91) | 50(0.74) | 51(0.51) | 51(0.50) | 51(0.00) | 26(0.96) | 21(0.85) | 47(0.11) | 8(0.93) | 22(0.88) | 51(0.00) | 35(0.30) | 10(0.96) | 49(0.11) | 12(0.19) | 21(1.48) | 8(1.35) | 46(0.87) | 49(1.32) | 46(0.95) | 43(0.81) | 43(1.24) | 43(0.91) | 46(0.14) | 45(0.73) | 48(0.70) | 51(0.62) | 46(0.08) | 1(0.87) | 49(0.45) | 1(1.48) | 15(3.10) | 2(6.68) | 39(2.51%) | 46(0.66) | 46(1.08) | 46(0.93) | 43(0.57) | 42(0.95) | 43(0.86) | 46(0.17) | 43(0.49) | 46(0.73) | 44(0.35) | 46(0.10) | 3(0.84) | 21(0.88) | 6(0.24) | 13(0.95) | 5(2.41) | 15(1.94%) | 46(0.72) | 48(1.05) | 46(0.92) | 43(0.64) | 43(0.95) | 43(0.84) | 46(0.15) | 47(0.57) | 46(0.62) | 51(0.44) | 46(0.09) | 3(0.83) | 49(0.38) | 11(0.36) | 11(2.31) | 2(4.95) | 27(2.69%) |
| pbmm2-pbsv | 4(4.05) | 3(4.66) | 12(3.73) | 1(3.66) | 1(3.96) | 4(3.49) | 37(0.95) | 9(0.94) | 6(0.93) | 19(0.63) | 18(0.57) | 9(0.96) | 38(0.97) | 2(0.99) | 2(0.98) | 8(0.77) | 13(0.97) | 12(0.96) | 38(0.94) | 31(0.89) | 20(0.88) | 27(0.53) | 24(0.40) | 9(0.97) | 49(0.12) | 1(2.61) | 10(1.93) | 2(2.05) | 3(4.10) | 1(4.70) | 8(3.79) | 1(3.69) | 1(3.97) | 1(3.51) | 32(0.96) | 8(0.96) | 5(0.95) | 15(0.63) | 21(0.58) | 4(0.97) | 34(0.97) | 1(1.00) | 1(0.99) | 5(0.77) | 10(0.99) | 8(0.97) | 22(0.95) | 22(0.92) | 16(0.91) | 22(0.53) | 25(0.41) | 5(0.97) | 45(0.10) | 3(1.99) | 13(1.86) | 1(2.69) | 3(4.04) | 1(4.69) | 12(3.72) | 1(3.67) | 1(4.00) | 3(3.48) | 31(0.96) | 5(0.96) | 5(0.95) | 21(0.60) | 22(0.57) | 4(0.96) | 39(0.96) | 1(1.00) | 1(0.99) | 5(0.78) | 12(0.99) | 7(0.96) | 25(0.95) | 16(0.92) | 13(0.91) | 30(0.49) | 24(0.40) | 7(0.97) | 48(0.14) | 1(1.77) | 12(1.88) | 1(2.63) | 37(1.61) | 19(1.73) | 37(1.50) | 37(1.49) | 30(1.59) | 34(1.41) | 39(0.83) | 34(0.78) | 22(0.88) | 20(0.86) | 39(0.78) | 40(0.72) | 3(3.31) | 15(1.21) | 1(5.90) | 14(2.68) | 41(3.18%) | 18(1.59) | 11(1.75) | 33(1.47) | 24(1.36) | 29(1.41) | 32(1.32) | 33(0.82) | 15(0.78) | 30(0.88) | 1(0.87) | 33(0.76) | 33(0.70) | 3(2.37) | 4(0.46) | 2(4.24) | 9(2.25) | 31(2.79%) | 44(1.33) | 12(1.72) | 45(1.20) | 41(1.23) | 19(1.61) | 42(1.12) | 44(0.68) | 45(0.65) | 21(0.86) | 10(0.86) | 45(0.62) | 48(0.58) | 3(2.83) | 3(0.59) | 2(5.22) | 10(2.38) | 30(2.71%) |
| pbmm2-picky | 49(1.61) | 46(2.37) | 47(2.14) | 52(0.79) | 51(1.04) | 52(0.87) | 52(0.06) | 52(0.02) | 52(0.17) | 3(0.70) | 33(0.47) | 39(0.35) | 52(0.54) | 52(0.40) | 52(0.39) | 15(0.71) | 48(0.50) | 39(0.21) | 52(0.03) | 52(0.01) | 52(0.11) | 8(0.69) | 14(0.44) | 4(0.97) | 53(0.00) | 52(0.08) | 48(0.72) | 53(0.12) | 50(1.84) | 37(3.58) | 47(2.14) | 51(0.85) | 50(1.43) | 51(0.87) | 52(0.07) | 52(0.03) | 52(0.20) | 9(0.67) | 24(0.57) | 33(0.50) | 45(0.93) | 44(0.87) | 44(0.75) | 20(0.67) | 45(0.77) | 39(0.34) | 52(0.04) | 52(0.01) | 52(0.11) | 10(0.67) | 11(0.46) | 4(0.97) | 52(0.03) | 52(0.00) | 51(0.47) | 50(0.24) | 49(1.73) | 42(3.18) | 44(2.17) | 50(0.88) | 50(1.35) | 50(0.91) | 52(0.07) | 52(0.03) | 52(0.19) | 6(0.71) | 24(0.55) | 38(0.39) | 48(0.86) | 47(0.65) | 46(0.64) | 18(0.71) | 45(0.72) | 39(0.24) | 52(0.04) | 52(0.01) | 52(0.11) | 7(0.71) | 14(0.44) | 4(0.97) | 52(0.01) | 52(0.00) | 51(0.48) | 53(0.11) | 52(0.11) | 47(1.49) | 52(0.06) | 52(0.03) | 51(0.44) | 52(0.02) | 52(0.07) | 52(0.04) | 46(0.71) | 47(0.78) | 52(0.04) | 52(0.02) | 51(0.21) | 53(0.07) | 32(2.20) | 29(1.32) | NA | 52(0.09) | 52(0.67) | 52(0.06) | 53(0.02) | 52(0.17) | 53(0.02) | 52(0.07) | 52(0.02) | 51(0.47) | 53(0.21) | 53(0.04) | 52(0.02) | 26(0.75) | 51(0.02) | 38(0.40) | 45(0.22) | NA | 52(0.06) | 51(0.96) | 52(0.03) | 52(0.01) | 52(0.25) | 52(0.01) | 52(0.04) | 51(0.02) | 51(0.49) | 50(0.46) | 52(0.02) | 51(0.01) | 51(0.25) | 47(0.10) | 14(2.08) | 39(0.41) | NA |
| pbmm2-sniffles | 31(3.36) | 37(3.42) | 11(3.75) | 36(2.24) | 40(1.90) | 16(3.13) | 35(0.95) | 33(0.88) | 31(0.85) | 14(0.64) | 32(0.48) | 38(0.40) | 34(0.97) | 33(0.92) | 31(0.87) | 28(0.56) | 42(0.71) | 38(0.26) | 36(0.94) | 42(0.84) | 33(0.84) | 4(0.76) | 31(0.36) | 35(0.84) | 32(0.56) | 14(1.24) | 3(3.14) | 30(0.57) | 31(3.41) | 38(3.51) | 9(3.77) | 36(2.31) | 40(2.00) | 18(3.15) | 35(0.96) | 27(0.93) | 20(0.90) | 14(0.63) | 32(0.50) | 38(0.39) | 23(0.97) | 27(0.97) | 31(0.92) | 31(0.56) | 46(0.75) | 40(0.26) | 34(0.94) | 39(0.89) | 28(0.88) | 7(0.73) | 29(0.38) | 35(0.84) | 30(0.88) | 15(0.24) | 5(2.69) | 36(0.49) | 30(3.40) | 36(3.51) | 8(3.78) | 36(2.34) | 42(2.01) | 11(3.28) | 29(0.96) | 28(0.91) | 23(0.88) | 7(0.69) | 31(0.48) | 39(0.37) | 24(0.97) | 30(0.95) | 30(0.90) | 27(0.62) | 44(0.73) | 40(0.24) | 31(0.94) | 36(0.86) | 30(0.86) | 3(0.78) | 27(0.36) | 34(0.84) | 31(0.68) | 11(0.20) | 5(2.93) | 35(0.51) | 41(1.60) | 31(1.70) | 36(1.51) | 42(1.23) | 44(1.21) | 41(1.31) | 45(0.79) | 24(0.81) | 45(0.84) | 15(0.87) | 45(0.75) | 29(0.76) | 8(3.15) | 10(1.26) | 50(0.05) | 24(2.21) | 1(0.89%) | 43(1.15) | 43(1.17) | 31(1.47) | 42(0.92) | 44(0.87) | 33(1.31) | 30(0.83) | 47(0.33) | 44(0.85) | 50(0.32) | 23(0.81) | 37(0.66) | 11(1.12) | 13(0.18) | 47(0.15) | 35(0.41) | 49(5.31%) | 37(1.53) | 39(1.55) | 25(1.56) | 42(1.19) | 42(1.12) | 36(1.37) | 42(0.75) | 24(0.78) | 43(0.73) | 30(0.83) | 25(0.82) | 29(0.74) | 7(2.24) | 12(0.35) | 53(0.10) | 25(1.01) | 49(7.43%) |
| pbmm2-sniffles2 | 17(3.75) | 16(4.25) | 14(3.69) | 16(3.16) | 16(3.27) | 12(3.22) | 13(0.97) | 19(0.93) | 14(0.91) | 8(0.67) | 36(0.45) | 28(0.74) | 15(0.98) | 27(0.94) | 20(0.94) | 16(0.70) | 6(1.00) | 30(0.63) | 21(0.95) | 12(0.92) | 19(0.88) | 10(0.65) | 38(0.29) | 30(0.88) | 22(1.14) | 16(1.19) | 6(2.91) | 34(0.49) | 20(3.77) | 13(4.27) | 15(3.69) | 17(3.17) | 18(3.32) | 17(3.18) | 6(0.97) | 4(0.96) | 9(0.94) | 11(0.64) | 36(0.48) | 27(0.72) | 15(0.98) | 14(0.99) | 8(0.98) | 14(0.70) | 6(1.00) | 30(0.60) | 16(0.96) | 8(0.94) | 18(0.91) | 16(0.59) | 37(0.32) | 29(0.88) | 21(1.56) | 12(0.28) | 6(2.49) | 30(0.64) | 18(3.75) | 16(4.24) | 13(3.70) | 15(3.25) | 14(3.36) | 10(3.32) | 9(0.97) | 6(0.95) | 9(0.93) | 11(0.67) | 34(0.46) | 27(0.70) | 17(0.98) | 19(0.97) | 12(0.97) | 15(0.71) | 7(1.00) | 31(0.59) | 17(0.96) | 7(0.93) | 17(0.90) | 13(0.63) | 36(0.30) | 28(0.88) | 26(1.17) | 10(0.20) | 6(2.63) | 34(0.52) | 7(1.70) | 21(1.73) | 8(1.68) | 6(1.64) | 16(1.65) | 8(1.63) | 5(0.87) | 8(0.83) | 13(0.89) | 27(0.84) | 5(0.86) | 12(0.83) | 7(3.15) | 8(1.30) | 51(0.03) | 15(2.67) | 25(1.76%) | 10(1.65) | 21(1.69) | 9(1.63) | 7(1.57) | 11(1.60) | 6(1.56) | 3(0.87) | 12(0.78) | 8(0.91) | 26(0.77) | 5(0.83) | 18(0.80) | 16(1.04) | 24(0.16) | 53(0.07) | 20(0.71) | 22(2.42%) | 3(1.69) | 11(1.73) | 6(1.66) | 3(1.62) | 8(1.66) | 4(1.58) | 3(0.87) | 3(0.83) | 10(0.88) | 23(0.84) | 6(0.85) | 7(0.81) | 5(2.38) | 13(0.33) | 52(0.10) | 15(1.68) | 9(2.03%) |
| pbmm2-svim | 3(4.08) | 7(4.46) | 3(3.88) | 25(2.79) | 26(2.92) | 30(2.74) | 21(0.96) | 32(0.89) | 22(0.88) | 4(0.70) | 19(0.57) | 8(0.96) | 23(0.97) | 36(0.87) | 33(0.86) | 7(0.78) | 29(0.88) | 11(0.96) | 18(0.96) | 18(0.91) | 15(0.90) | 16(0.63) | 21(0.42) | 13(0.97) | 30(0.69) | 25(0.80) | 21(1.49) | 12(1.30) | 2(4.16) | 4(4.60) | 3(3.92) | 26(2.86) | 25(3.01) | 28(2.77) | 15(0.97) | 21(0.94) | 17(0.93) | 10(0.67) | 11(0.61) | 3(0.97) | 29(0.97) | 35(0.95) | 27(0.93) | 7(0.74) | 24(0.97) | 6(0.97) | 13(0.96) | 10(0.94) | 10(0.92) | 14(0.61) | 16(0.44) | 6(0.97) | 33(0.68) | 23(0.19) | 28(1.16) | 14(1.20) | 1(4.15) | 5(4.55) | 1(3.94) | 25(2.85) | 27(2.95) | 25(2.80) | 16(0.97) | 24(0.92) | 17(0.91) | 4(0.72) | 14(0.59) | 3(0.97) | 29(0.97) | 37(0.91) | 31(0.90) | 6(0.77) | 31(0.93) | 6(0.97) | 13(0.96) | 13(0.92) | 11(0.91) | 10(0.67) | 18(0.43) | 8(0.97) | 33(0.55) | 27(0.09) | 26(1.17) | 14(1.16) | 2(1.71) | 33(1.70) | 2(1.73) | 10(1.62) | 32(1.58) | 2(1.67) | 2(0.88) | 6(0.84) | 21(0.88) | 36(0.83) | 1(0.88) | 6(0.85) | 11(2.92) | 16(1.19) | 8(3.21) | 12(2.85) | 19(1.59%) | 8(1.66) | 29(1.66) | 4(1.66) | 13(1.48) | 28(1.42) | 5(1.56) | 4(0.87) | 10(0.79) | 24(0.89) | 27(0.77) | 2(0.85) | 5(0.82) | 18(0.99) | 19(0.17) | 16(0.71) | 19(0.75) | 10(1.85%) | 11(1.66) | 36(1.60) | 1(1.72) | 19(1.51) | 33(1.42) | 1(1.62) | 4(0.86) | 16(0.80) | 29(0.85) | 41(0.75) | 1(0.88) | 2(0.85) | 13(1.80) | 31(0.21) | 16(1.60) | 21(1.10) | 7(1.96%) |
| pbmm2-svision | 36(3.09) | 39(3.37) | 37(3.02) | 28(2.68) | 31(2.66) | 28(2.82) | 32(0.96) | 41(0.82) | 40(0.81) | 5(0.69) | 9(0.61) | 51(0.00) | 42(0.95) | 45(0.73) | 44(0.71) | 13(0.75) | 18(0.94) | 51(0.00) | 6(0.97) | 3(0.95) | 1(0.94) | 11(0.65) | 11(0.46) | 51(0.00) | 29(0.93) | 27(0.76) | 36(0.99) | 8(1.35) | 36(3.08) | 40(3.42) | 36(2.95) | 29(2.70) | 32(2.73) | 29(2.76) | 40(0.95) | 39(0.87) | 39(0.85) | 16(0.62) | 5(0.64) | 51(0.00) | 46(0.93) | 46(0.79) | 43(0.76) | 10(0.72) | 15(0.98) | 51(0.00) | 4(0.97) | 2(0.96) | 1(0.95) | 19(0.55) | 7(0.47) | 51(0.00) | 29(0.89) | 10(0.33) | 36(0.82) | 18(1.06) | 35(3.05) | 38(3.38) | 33(2.95) | 29(2.67) | 32(2.71) | 27(2.77) | 30(0.96) | 40(0.82) | 40(0.81) | 12(0.64) | 5(0.62) | 51(0.00) | 43(0.94) | 46(0.73) | 44(0.71) | 10(0.74) | 22(0.97) | 51(0.00) | 4(0.97) | 2(0.95) | 1(0.95) | 20(0.57) | 8(0.46) | 51(0.00) | 30(0.71) | 9(0.22) | 33(0.88) | 18(1.03) | 3(1.71) | 36(1.70) | 1(1.73) | 8(1.63) | 29(1.59) | 1(1.67) | 4(0.87) | 5(0.84) | 19(0.88) | 41(0.82) | 2(0.87) | 4(0.86) | 25(2.21) | 31(0.81) | 31(2.54) | 32(1.08) | 17(1.52%) | 14(1.61) | 36(1.56) | 1(1.69) | 20(1.41) | 33(1.29) | 2(1.57) | 8(0.86) | 18(0.75) | 32(0.88) | 34(0.68) | 3(0.84) | 1(0.84) | 32(0.58) | 49(0.11) | 25(0.51) | 31(0.49) | 16(1.99%) | 16(1.64) | 38(1.57) | 2(1.72) | 24(1.47) | 37(1.37) | 2(1.61) | 6(0.86) | 23(0.78) | 32(0.85) | 42(0.72) | 2(0.87) | 1(0.85) | 23(1.34) | 26(0.25) | 23(1.27) | 29(0.68) | 5(1.91%) |
| winnowmap-cutesv | 8(3.94) | 21(4.18) | 6(3.85) | 6(3.41) | 10(3.37) | 5(3.48) | 1(0.98) | 17(0.93) | 8(0.92) | 31(0.50) | 5(0.65) | 20(0.89) | 4(0.99) | 21(0.96) | 21(0.93) | 37(0.43) | 24(0.92) | 19(0.88) | 14(0.96) | 22(0.90) | 9(0.91) | 20(0.59) | 5(0.50) | 29(0.90) | 7(1.85) | 48(0.26) | 44(0.85) | 48(0.26) | 9(3.91) | 31(4.14) | 7(3.84) | 10(3.33) | 19(3.28) | 5(3.44) | 9(0.97) | 19(0.95) | 16(0.93) | 39(0.44) | 3(0.65) | 20(0.90) | 7(0.99) | 25(0.98) | 22(0.94) | 38(0.36) | 31(0.93) | 18(0.88) | 29(0.95) | 28(0.92) | 15(0.91) | 20(0.55) | 3(0.50) | 24(0.93) | 7(2.31) | 45(0.04) | 44(0.73) | 51(0.23) | 7(3.95) | 18(4.23) | 4(3.87) | 10(3.31) | 19(3.24) | 6(3.43) | 14(0.97) | 18(0.93) | 13(0.92) | 32(0.48) | 2(0.65) | 17(0.93) | 6(0.99) | 23(0.97) | 18(0.95) | 36(0.40) | 19(0.98) | 19(0.90) | 26(0.95) | 24(0.90) | 15(0.90) | 18(0.59) | 2(0.48) | 19(0.95) | 2(2.25) | 45(0.02) | 41(0.74) | 50(0.23) | 10(1.69) | 6(1.80) | 23(1.59) | 7(1.63) | 6(1.76) | 19(1.52) | 12(0.86) | 12(0.83) | 7(0.91) | 9(0.89) | 28(0.82) | 27(0.77) | 33(1.97) | 48(0.57) | 25(2.67) | 48(0.29) | 13(1.47%) | 5(1.67) | 6(1.76) | 19(1.60) | 5(1.59) | 8(1.66) | 11(1.54) | 11(0.86) | 4(0.82) | 13(0.90) | 9(0.85) | 17(0.81) | 22(0.78) | 47(0.25) | 28(0.16) | 26(0.51) | 50(0.18) | 38(2.87%) | 8(1.66) | 19(1.71) | 17(1.62) | 6(1.59) | 12(1.64) | 9(1.54) | 14(0.85) | 11(0.81) | 14(0.87) | 24(0.84) | 19(0.83) | 19(0.78) | 29(1.11) | 48(0.10) | 28(1.22) | 46(0.31) | 26(2.67%) |
| winnowmap-cutesv2 | 7(3.96) | 17(4.20) | 4(3.88) | 4(3.42) | 11(3.37) | 3(3.51) | 3(0.97) | 28(0.91) | 16(0.90) | 30(0.50) | 4(0.66) | 16(0.91) | 3(0.99) | 30(0.93) | 25(0.91) | 35(0.45) | 15(0.96) | 21(0.87) | 20(0.95) | 34(0.89) | 18(0.89) | 22(0.57) | 2(0.51) | 16(0.96) | 4(1.93) | 43(0.32) | 43(0.89) | 20(1.06) | 14(3.87) | 26(4.17) | 12(3.72) | 11(3.32) | 17(3.33) | 9(3.34) | 8(0.97) | 18(0.95) | 14(0.93) | 45(0.37) | 1(0.66) | 17(0.92) | 6(0.99) | 26(0.98) | 21(0.95) | 43(0.35) | 22(0.97) | 19(0.88) | 27(0.95) | 25(0.92) | 13(0.92) | 43(0.39) | 2(0.50) | 12(0.96) | 8(2.29) | 41(0.05) | 45(0.73) | 19(1.05) | 9(3.92) | 14(4.25) | 7(3.79) | 12(3.30) | 18(3.27) | 9(3.35) | 12(0.97) | 17(0.94) | 11(0.93) | 41(0.44) | 1(0.65) | 15(0.93) | 5(0.99) | 21(0.97) | 16(0.95) | 37(0.40) | 10(0.99) | 18(0.90) | 24(0.95) | 22(0.91) | 14(0.91) | 31(0.49) | 1(0.48) | 14(0.96) | 1(2.25) | 47(0.02) | 43(0.73) | 17(1.05) | 14(1.68) | 35(1.70) | 11(1.66) | 9(1.62) | 15(1.65) | 10(1.59) | 20(0.85) | 14(0.82) | 25(0.88) | 38(0.82) | 16(0.84) | 13(0.83) | 34(1.86) | 43(0.65) | 26(2.66) | 21(2.45) | 33(2.13%) | 6(1.67) | 8(1.76) | 22(1.59) | 6(1.59) | 7(1.67) | 13(1.52) | 15(0.85) | 6(0.81) | 14(0.90) | 10(0.85) | 25(0.81) | 23(0.78) | 48(0.25) | 26(0.16) | 27(0.51) | 17(0.96) | 40(2.97%) | 6(1.66) | 16(1.72) | 18(1.61) | 7(1.59) | 9(1.65) | 14(1.53) | 12(0.85) | 10(0.81) | 13(0.87) | 22(0.84) | 20(0.83) | 21(0.78) | 30(1.10) | 46(0.10) | 27(1.22) | 19(1.36) | 17(2.32%) |
| winnowmap-debreak | 20(3.70) | 15(4.25) | 25(3.37) | 11(3.32) | 7(3.57) | 15(3.19) | 10(0.97) | 4(0.95) | 1(0.95) | 15(0.64) | 2(0.67) | 35(0.47) | 32(0.97) | 22(0.96) | 12(0.96) | 5(0.79) | 3(1.00) | 34(0.53) | 4(0.97) | 5(0.94) | 2(0.94) | 28(0.53) | 3(0.51) | 41(0.43) | 6(1.88) | 39(0.42) | 26(1.33) | 40(0.44) | 27(3.55) | 24(4.18) | 31(3.22) | 15(3.23) | 9(3.58) | 22(3.06) | 23(0.96) | 3(0.96) | 3(0.95) | 21(0.56) | 19(0.58) | 35(0.48) | 27(0.97) | 24(0.98) | 11(0.98) | 17(0.69) | 4(1.00) | 35(0.55) | 19(0.96) | 6(0.95) | 9(0.92) | 30(0.47) | 24(0.41) | 40(0.43) | 9(2.22) | 43(0.04) | 21(1.41) | 39(0.45) | 25(3.63) | 25(4.15) | 27(3.35) | 9(3.31) | 8(3.56) | 16(3.20) | 8(0.97) | 3(0.96) | 2(0.95) | 22(0.60) | 6(0.62) | 33(0.47) | 31(0.97) | 17(0.97) | 10(0.97) | 23(0.67) | 3(1.00) | 35(0.54) | 3(0.97) | 3(0.95) | 3(0.94) | 25(0.55) | 10(0.45) | 37(0.42) | 7(2.09) | 40(0.03) | 22(1.47) | 40(0.38) | 21(1.66) | 29(1.71) | 16(1.62) | 21(1.57) | 27(1.60) | 18(1.54) | 23(0.85) | 20(0.81) | 32(0.87) | 30(0.84) | 19(0.83) | 22(0.79) | 29(2.16) | 38(0.75) | 37(0.55) | 47(0.31) | 48(4.29%) | 13(1.63) | 27(1.67) | 21(1.59) | 12(1.50) | 19(1.50) | 17(1.51) | 20(0.84) | 11(0.78) | 29(0.88) | 22(0.79) | 18(0.81) | 24(0.78) | 44(0.31) | 35(0.14) | 36(0.43) | 40(0.32) | 47(3.61%) | 14(1.65) | 28(1.67) | 12(1.63) | 16(1.53) | 26(1.55) | 16(1.52) | 19(0.83) | 8(0.81) | 33(0.84) | 29(0.83) | 18(0.83) | 13(0.80) | 28(1.12) | 44(0.10) | 35(0.64) | 40(0.40) | 44(3.21%) |
| winnowmap-delly | 45(1.90) | 52(1.94) | 50(1.86) | 42(1.78) | 43(1.72) | 45(1.84) | 17(0.97) | 13(0.93) | 27(0.87) | 52(0.00) | 53(0.00) | 52(0.00) | 33(0.97) | 15(0.97) | 9(0.97) | 52(0.00) | 53(0.00) | 52(0.00) | 10(0.96) | 23(0.90) | 45(0.79) | 52(0.00) | 53(0.00) | 52(0.00) | 41(0.19) | 6(1.95) | 15(1.84) | 23(0.93) | 48(1.92) | 53(1.95) | 52(1.88) | 43(1.82) | 42(1.78) | 48(1.87) | 28(0.96) | 14(0.95) | 27(0.88) | 52(0.00) | 53(0.00) | 52(0.00) | 37(0.97) | 16(0.99) | 6(0.98) | 52(0.00) | 53(0.00) | 52(0.00) | 20(0.96) | 21(0.92) | 43(0.81) | 52(0.00) | 53(0.00) | 52(0.00) | 42(0.14) | 6(0.98) | 7(2.11) | 23(1.01) | 47(1.91) | 53(1.95) | 49(1.88) | 43(1.82) | 45(1.77) | 45(1.87) | 15(0.97) | 10(0.95) | 22(0.88) | 52(0.00) | 53(0.00) | 52(0.00) | 34(0.97) | 12(0.98) | 7(0.98) | 52(0.00) | 53(0.00) | 52(0.00) | 11(0.96) | 19(0.92) | 39(0.80) | 52(0.00) | 53(0.00) | 52(0.00) | 45(0.14) | 5(1.59) | 7(2.01) | 7(1.47) | 38(1.60) | 16(1.74) | 40(1.50) | 31(1.52) | 14(1.66) | 32(1.42) | 34(0.84) | 39(0.77) | 29(0.87) | 16(0.87) | 33(0.81) | 44(0.69) | 47(0.56) | 24(1.15) | 13(3.14) | 5(4.43) | 14(1.48%) | 23(1.58) | 20(1.69) | 27(1.50) | 21(1.40) | 21(1.47) | 29(1.35) | 25(0.84) | 20(0.74) | 23(0.89) | 18(0.80) | 28(0.79) | 34(0.70) | 9(1.22) | 38(0.14) | 7(1.59) | 7(2.32) | 12(1.89%) | 25(1.61) | 18(1.71) | 30(1.53) | 17(1.53) | 15(1.63) | 23(1.45) | 31(0.83) | 20(0.78) | 30(0.85) | 8(0.86) | 27(0.81) | 36(0.72) | 40(0.59) | 6(0.52) | 6(2.72) | 5(3.69) | 45(3.22%) |
| winnowmap-nanosv | 44(2.09) | 45(2.76) | 43(2.34) | 46(1.65) | 39(2.01) | 42(2.04) | 50(0.15) | 48(0.65) | 48(0.65) | 53(0.00) | 22(0.56) | 30(0.72) | 50(0.74) | 50(0.51) | 50(0.52) | 53(0.00) | 22(0.93) | 32(0.58) | 50(0.09) | 33(0.89) | 26(0.87) | 53(0.00) | 26(0.40) | 6(0.97) | 37(0.22) | 11(1.34) | 23(1.46) | 17(1.15) | 44(2.10) | 48(2.73) | 42(2.37) | 47(1.66) | 41(1.97) | 42(2.08) | 46(0.19) | 48(0.65) | 48(0.64) | 53(0.00) | 27(0.55) | 25(0.72) | 52(0.70) | 52(0.50) | 52(0.50) | 53(0.00) | 29(0.96) | 33(0.57) | 46(0.11) | 29(0.91) | 26(0.88) | 53(0.00) | 28(0.38) | 10(0.96) | 37(0.25) | 17(0.21) | 15(1.78) | 10(1.38) | 43(2.18) | 48(2.92) | 41(2.31) | 46(1.77) | 40(2.15) | 42(2.07) | 46(0.19) | 46(0.63) | 46(0.62) | 53(0.00) | 29(0.50) | 21(0.86) | 51(0.71) | 52(0.48) | 52(0.49) | 53(0.00) | 25(0.96) | 26(0.78) | 46(0.11) | 26(0.90) | 28(0.86) | 53(0.00) | 31(0.34) | 11(0.96) | 36(0.42) | 26(0.13) | 15(1.85) | 9(1.26) | 48(0.83) | 52(1.24) | 48(0.91) | 45(0.77) | 46(1.15) | 45(0.86) | 49(0.12) | 47(0.71) | 51(0.62) | 53(0.61) | 49(0.07) | 7(0.85) | 40(0.64) | 6(1.37) | 27(2.66) | 3(6.36) | 40(2.59%) | 47(0.64) | 47(1.05) | 48(0.88) | 45(0.53) | 43(0.89) | 45(0.79) | 47(0.14) | 42(0.49) | 47(0.69) | 43(0.36) | 47(0.08) | 14(0.80) | 13(1.07) | 7(0.23) | 17(0.66) | 2(2.54) | 3(1.68%) | 48(0.63) | 49(1.01) | 47(0.84) | 48(0.55) | 45(0.90) | 45(0.76) | 49(0.10) | 48(0.53) | 47(0.61) | 52(0.40) | 49(0.05) | 17(0.79) | 45(0.49) | 17(0.31) | 15(2.05) | 3(4.92) | 25(2.57%) |
| winnowmap-nanovar | 19(3.74) | 32(4.02) | 16(3.66) | 2(3.53) | 4(3.67) | 1(3.54) | 43(0.93) | 43(0.79) | 41(0.81) | 34(0.45) | 6(0.64) | 14(0.92) | 28(0.97) | 40(0.85) | 32(0.86) | 42(0.38) | 19(0.94) | 18(0.89) | 44(0.90) | 49(0.74) | 46(0.77) | 23(0.57) | 7(0.49) | 15(0.96) | 35(0.25) | 13(1.24) | 8(2.07) | 5(2.04) | 23(3.70) | 32(4.09) | 23(3.53) | 2(3.53) | 3(3.79) | 6(3.44) | 43(0.93) | 42(0.85) | 38(0.85) | 42(0.39) | 12(0.61) | 16(0.93) | 26(0.97) | 40(0.91) | 32(0.91) | 45(0.35) | 25(0.97) | 16(0.89) | 44(0.89) | 49(0.79) | 45(0.79) | 33(0.45) | 17(0.44) | 11(0.96) | 36(0.30) | 34(0.11) | 18(1.57) | 6(2.10) | 20(3.75) | 28(4.14) | 19(3.61) | 2(3.54) | 3(3.76) | 2(3.48) | 42(0.93) | 41(0.81) | 38(0.82) | 35(0.46) | 11(0.61) | 11(0.94) | 25(0.97) | 40(0.88) | 33(0.89) | 38(0.39) | 21(0.97) | 16(0.92) | 42(0.90) | 46(0.76) | 42(0.77) | 26(0.55) | 15(0.44) | 12(0.96) | 38(0.29) | 30(0.06) | 17(1.74) | 6(2.10) | 31(1.63) | 34(1.70) | 28(1.57) | 25(1.55) | 26(1.60) | 23(1.50) | 35(0.83) | 31(0.80) | 30(0.87) | 32(0.83) | 34(0.80) | 30(0.76) | 41(0.62) | 5(1.37) | 22(2.85) | 9(3.64) | 32(2.09%) | 29(1.56) | 22(1.68) | 34(1.45) | 18(1.45) | 18(1.52) | 26(1.38) | 31(0.82) | 25(0.73) | 16(0.90) | 23(0.78) | 35(0.76) | 35(0.69) | 28(0.68) | 9(0.20) | 11(1.11) | 12(1.69) | 42(2.99%) | 34(1.54) | 34(1.65) | 38(1.45) | 27(1.45) | 29(1.54) | 35(1.38) | 34(0.82) | 38(0.72) | 11(0.88) | 39(0.76) | 37(0.78) | 41(0.68) | 47(0.45) | 24(0.26) | 12(2.23) | 9(2.90) | 43(3.21%) |
| winnowmap-pbsv | 1(4.13) | 4(4.62) | 7(3.85) | 3(3.51) | 3(3.68) | 7(3.39) | 28(0.96) | 11(0.94) | 4(0.94) | 16(0.64) | 1(0.69) | 15(0.92) | 37(0.97) | 7(0.98) | 5(0.97) | 6(0.79) | 9(0.99) | 17(0.89) | 24(0.95) | 26(0.90) | 13(0.90) | 29(0.53) | 1(0.53) | 22(0.94) | 42(0.18) | 3(2.36) | 11(1.93) | 4(2.04) | 4(3.98) | 7(4.54) | 16(3.68) | 4(3.42) | 6(3.66) | 10(3.27) | 37(0.95) | 16(0.95) | 8(0.94) | 30(0.51) | 7(0.63) | 14(0.94) | 38(0.97) | 6(0.99) | 5(0.98) | 23(0.66) | 8(0.99) | 14(0.93) | 35(0.94) | 26(0.92) | 17(0.91) | 41(0.41) | 10(0.46) | 20(0.94) | 47(0.09) | 2(2.00) | 11(1.87) | 3(2.28) | 5(3.99) | 3(4.57) | 15(3.69) | 5(3.43) | 5(3.70) | 13(3.26) | 27(0.96) | 7(0.95) | 4(0.95) | 28(0.53) | 8(0.61) | 10(0.94) | 38(0.96) | 3(0.99) | 3(0.98) | 20(0.69) | 11(0.99) | 9(0.94) | 23(0.95) | 20(0.92) | 10(0.91) | 41(0.43) | 12(0.44) | 21(0.94) | 46(0.14) | 2(1.77) | 11(1.91) | 3(2.52) | 42(1.60) | 25(1.72) | 39(1.50) | 39(1.48) | 36(1.57) | 35(1.40) | 41(0.82) | 35(0.78) | 31(0.87) | 22(0.85) | 42(0.78) | 39(0.72) | 5(3.28) | 12(1.25) | 4(5.84) | 19(2.52) | 42(3.19%) | 20(1.59) | 13(1.74) | 32(1.47) | 26(1.35) | 30(1.38) | 31(1.32) | 34(0.81) | 16(0.78) | 33(0.88) | 5(0.86) | 34(0.76) | 31(0.71) | 4(2.33) | 2(0.50) | 1(4.31) | 10(2.19) | 27(2.66%) | 38(1.50) | 21(1.71) | 41(1.36) | 34(1.38) | 24(1.57) | 40(1.27) | 39(0.76) | 31(0.74) | 27(0.85) | 11(0.86) | 43(0.70) | 43(0.66) | 1(2.87) | 1(0.61) | 1(5.26) | 11(2.32) | 33(2.83%) |
| winnowmap-picky | 51(1.50) | 42(3.12) | 46(2.18) | 51(0.82) | 50(1.30) | 51(0.88) | 51(0.10) | 51(0.04) | 51(0.21) | 12(0.65) | 16(0.58) | 43(0.14) | 47(0.87) | 38(0.86) | 47(0.62) | 22(0.65) | 44(0.67) | 43(0.08) | 51(0.05) | 51(0.02) | 51(0.13) | 12(0.65) | 4(0.50) | 17(0.96) | 51(0.04) | 50(0.24) | 32(1.05) | 44(0.32) | 52(1.41) | 42(3.15) | 48(2.03) | 52(0.78) | 52(1.35) | 52(0.77) | 51(0.12) | 51(0.05) | 51(0.22) | 26(0.54) | 23(0.58) | 43(0.13) | 47(0.93) | 38(0.92) | 47(0.64) | 29(0.57) | 47(0.67) | 43(0.07) | 51(0.06) | 51(0.03) | 51(0.13) | 26(0.51) | 1(0.50) | 23(0.93) | 50(0.08) | 53(0.00) | 37(0.81) | 43(0.39) | 51(1.44) | 41(3.20) | 46(2.11) | 51(0.82) | 51(1.34) | 51(0.84) | 50(0.09) | 51(0.03) | 51(0.20) | 17(0.63) | 23(0.55) | 41(0.14) | 47(0.88) | 34(0.92) | 45(0.67) | 24(0.63) | 47(0.69) | 42(0.08) | 50(0.05) | 51(0.01) | 51(0.12) | 14(0.63) | 6(0.46) | 17(0.96) | 42(0.20) | 53(0.00) | 34(0.84) | 44(0.33) | 51(0.12) | 48(1.34) | 51(0.06) | 51(0.03) | 52(0.40) | 51(0.02) | 51(0.08) | 51(0.04) | 52(0.62) | 49(0.72) | 51(0.04) | 51(0.02) | 52(0.09) | 51(0.19) | 28(2.62) | 44(0.35) | NA | 51(0.13) | 51(0.71) | 51(0.08) | 51(0.04) | 51(0.18) | 51(0.02) | 51(0.09) | 51(0.04) | 52(0.38) | 48(0.34) | 50(0.06) | 51(0.02) | 45(0.28) | 52(0.02) | 10(1.28) | 36(0.37) | NA | 51(0.06) | 52(0.87) | 51(0.03) | 51(0.01) | 53(0.24) | 51(0.01) | 51(0.04) | 52(0.02) | 52(0.40) | 49(0.46) | 51(0.02) | 52(0.01) | 53(0.09) | 53(0.00) | 10(2.33) | 42(0.36) | NA |
| winnowmap-sniffles | 10(3.92) | 14(4.26) | 9(3.78) | 39(1.98) | 46(1.62) | 32(2.70) | 27(0.96) | 36(0.85) | 32(0.85) | 10(0.67) | 7(0.63) | 24(0.82) | 21(0.97) | 35(0.90) | 30(0.89) | 21(0.65) | 16(0.96) | 25(0.77) | 30(0.94) | 44(0.81) | 39(0.82) | 9(0.69) | 10(0.47) | 31(0.87) | 34(0.46) | 17(1.18) | 2(3.14) | 32(0.52) | 18(3.85) | 19(4.22) | 13(3.70) | 40(1.88) | 48(1.53) | 35(2.61) | 39(0.95) | 37(0.89) | 29(0.88) | 18(0.58) | 14(0.60) | 23(0.82) | 39(0.97) | 36(0.94) | 29(0.92) | 30(0.56) | 16(0.98) | 24(0.77) | 41(0.94) | 45(0.84) | 37(0.84) | 15(0.61) | 18(0.43) | 30(0.88) | 34(0.57) | 21(0.19) | 2(2.88) | 35(0.53) | 10(3.88) | 12(4.28) | 10(3.75) | 39(2.00) | 47(1.64) | 29(2.76) | 32(0.95) | 34(0.86) | 25(0.87) | 18(0.63) | 17(0.58) | 23(0.86) | 32(0.97) | 35(0.92) | 27(0.91) | 30(0.56) | 13(0.99) | 23(0.84) | 35(0.94) | 43(0.82) | 34(0.83) | 8(0.71) | 23(0.41) | 29(0.88) | 34(0.54) | 20(0.16) | 2(2.97) | 36(0.50) | 36(1.61) | 26(1.72) | 33(1.53) | 49(0.56) | 49(0.52) | 48(0.63) | 44(0.80) | 26(0.81) | 41(0.84) | 11(0.87) | 43(0.77) | 33(0.76) | 12(2.90) | 17(1.18) | 47(0.08) | 28(1.91) | 38(2.34%) | 42(1.16) | 44(1.17) | 35(1.43) | 44(0.55) | 47(0.51) | 47(0.61) | 35(0.81) | 46(0.36) | 45(0.83) | 47(0.34) | 29(0.79) | 38(0.64) | 19(0.96) | 16(0.17) | 50(0.13) | 34(0.42) | 48(4.85%) | 41(1.49) | 40(1.52) | 36(1.50) | 45(0.61) | 48(0.55) | 47(0.70) | 41(0.75) | 35(0.74) | 42(0.73) | 37(0.79) | 31(0.80) | 40(0.69) | 11(2.11) | 16(0.31) | 47(0.11) | 24(1.02) | 23(2.50%) |
| winnowmap-sniffles2 | 13(3.81) | 13(4.29) | 15(3.67) | 12(3.26) | 9(3.38) | 11(3.26) | 4(0.97) | 22(0.92) | 9(0.91) | 20(0.63) | 14(0.58) | 31(0.71) | 9(0.99) | 29(0.93) | 18(0.94) | 9(0.77) | 4(1.00) | 31(0.60) | 15(0.96) | 19(0.91) | 17(0.89) | 30(0.53) | 22(0.41) | 33(0.86) | 17(1.41) | 20(1.05) | 1(3.19) | 37(0.47) | 24(3.69) | 18(4.23) | 22(3.55) | 16(3.18) | 14(3.36) | 19(3.15) | 14(0.97) | 13(0.96) | 10(0.94) | 24(0.54) | 28(0.53) | 28(0.69) | 11(0.99) | 23(0.98) | 9(0.98) | 18(0.68) | 3(1.00) | 31(0.58) | 26(0.95) | 13(0.93) | 20(0.90) | 34(0.45) | 30(0.36) | 33(0.85) | 15(1.81) | 26(0.18) | 1(2.96) | 34(0.60) | 21(3.74) | 11(4.28) | 18(3.61) | 14(3.25) | 11(3.41) | 14(3.26) | 3(0.97) | 12(0.95) | 10(0.93) | 19(0.62) | 28(0.51) | 28(0.69) | 9(0.99) | 25(0.96) | 11(0.97) | 9(0.75) | 4(1.00) | 32(0.58) | 14(0.96) | 9(0.93) | 18(0.90) | 29(0.53) | 30(0.34) | 32(0.85) | 14(1.64) | 23(0.14) | 4(2.97) | 29(0.56) | 17(1.67) | 38(1.69) | 13(1.65) | 18(1.59) | 24(1.61) | 13(1.58) | 25(0.85) | 16(0.82) | 37(0.85) | 34(0.83) | 13(0.84) | 15(0.81) | 16(2.66) | 4(1.38) | 49(0.06) | 23(2.32) | 23(1.72%) | 9(1.65) | 17(1.73) | 20(1.59) | 11(1.55) | 12(1.59) | 15(1.52) | 13(0.85) | 9(0.80) | 17(0.90) | 15(0.82) | 16(0.81) | 25(0.78) | 22(0.81) | 21(0.17) | 48(0.14) | 22(0.66) | 21(2.41%) | 7(1.66) | 22(1.71) | 15(1.62) | 9(1.57) | 17(1.63) | 10(1.53) | 15(0.85) | 9(0.81) | 19(0.87) | 25(0.84) | 17(0.83) | 15(0.79) | 10(2.13) | 19(0.30) | 48(0.11) | 16(1.58) | 15(2.26%) |
| winnowmap-svim | 5(4.03) | 6(4.49) | 10(3.77) | 27(2.70) | 27(2.83) | 33(2.66) | 6(0.97) | 38(0.84) | 35(0.85) | 11(0.65) | 10(0.61) | 11(0.95) | 18(0.98) | 43(0.81) | 38(0.82) | 12(0.76) | 17(0.95) | 3(0.98) | 8(0.96) | 38(0.87) | 25(0.87) | 24(0.57) | 12(0.45) | 25(0.92) | 20(1.31) | 29(0.73) | 18(1.54) | 10(1.32) | 8(3.94) | 8(4.49) | 17(3.66) | 30(2.60) | 31(2.77) | 37(2.54) | 19(0.97) | 36(0.90) | 26(0.89) | 27(0.53) | 17(0.59) | 10(0.96) | 20(0.98) | 42(0.88) | 34(0.88) | 22(0.66) | 14(0.98) | 2(0.99) | 21(0.95) | 31(0.91) | 24(0.89) | 35(0.45) | 22(0.42) | 26(0.92) | 25(1.38) | 31(0.12) | 24(1.36) | 12(1.24) | 4(4.03) | 6(4.53) | 9(3.77) | 28(2.68) | 29(2.81) | 33(2.66) | 4(0.97) | 33(0.87) | 26(0.87) | 14(0.64) | 13(0.59) | 5(0.96) | 19(0.98) | 43(0.84) | 37(0.85) | 13(0.72) | 9(0.99) | 1(0.99) | 8(0.97) | 28(0.89) | 21(0.88) | 21(0.57) | 20(0.42) | 26(0.92) | 22(1.38) | 33(0.05) | 24(1.32) | 11(1.20) | 22(1.66) | 44(1.64) | 10(1.67) | 23(1.55) | 40(1.52) | 11(1.59) | 26(0.84) | 23(0.81) | 43(0.84) | 43(0.80) | 8(0.85) | 14(0.82) | 15(2.73) | 25(1.12) | 6(3.45) | 11(2.90) | 20(1.63%) | 17(1.60) | 32(1.59) | 15(1.61) | 23(1.36) | 34(1.28) | 22(1.47) | 19(0.85) | 19(0.75) | 37(0.87) | 32(0.72) | 9(0.83) | 27(0.78) | 27(0.68) | 12(0.19) | 18(0.65) | 16(0.98) | 7(1.75%) | 30(1.57) | 41(1.49) | 5(1.66) | 33(1.39) | 38(1.28) | 11(1.53) | 18(0.84) | 36(0.73) | 38(0.82) | 43(0.67) | 4(0.86) | 10(0.81) | 20(1.51) | 34(0.18) | 18(1.48) | 20(1.14) | 6(1.94%) |
| winnowmap-svision | 39(3.00) | 40(3.18) | 36(3.04) | 31(2.49) | 35(2.36) | 29(2.79) | 40(0.95) | 45(0.76) | 44(0.77) | 18(0.63) | 3(0.66) | 53(0.00) | 44(0.93) | 47(0.63) | 45(0.66) | 24(0.64) | 11(0.98) | 53(0.00) | 2(0.97) | 7(0.93) | 5(0.93) | 17(0.63) | 6(0.50) | 53(0.00) | 21(1.17) | 32(0.65) | 31(1.06) | 13(1.28) | 37(2.94) | 41(3.21) | 37(2.92) | 34(2.46) | 35(2.41) | 33(2.69) | 41(0.94) | 44(0.77) | 43(0.77) | 19(0.58) | 2(0.65) | 53(0.00) | 48(0.91) | 48(0.64) | 45(0.66) | 21(0.67) | 12(0.98) | 53(0.00) | 8(0.96) | 5(0.95) | 4(0.94) | 27(0.51) | 4(0.49) | 53(0.00) | 26(1.33) | 14(0.25) | 33(0.97) | 17(1.07) | 37(2.91) | 43(3.15) | 34(2.94) | 33(2.45) | 35(2.38) | 30(2.73) | 37(0.95) | 43(0.74) | 43(0.75) | 24(0.58) | 3(0.64) | 53(0.00) | 45(0.92) | 48(0.61) | 47(0.62) | 26(0.62) | 6(1.00) | 53(0.00) | 2(0.97) | 6(0.95) | 4(0.94) | 27(0.55) | 3(0.47) | 53(0.00) | 25(1.29) | 14(0.18) | 35(0.84) | 22(0.96) | 23(1.65) | 45(1.64) | 9(1.67) | 22(1.56) | 39(1.53) | 9(1.59) | 29(0.84) | 22(0.81) | 42(0.84) | 45(0.80) | 10(0.85) | 11(0.83) | 35(1.82) | 34(0.80) | 29(2.58) | 31(1.10) | 27(1.82%) | 28(1.57) | 38(1.52) | 10(1.63) | 29(1.31) | 39(1.19) | 21(1.47) | 24(0.84) | 27(0.73) | 41(0.86) | 38(0.66) | 14(0.82) | 9(0.80) | 42(0.34) | 45(0.12) | 21(0.56) | 24(0.61) | 5(1.73%) | 33(1.55) | 44(1.46) | 10(1.66) | 38(1.34) | 40(1.23) | 18(1.51) | 22(0.83) | 39(0.72) | 40(0.82) | 44(0.65) | 9(0.85) | 11(0.81) | 37(0.94) | 28(0.24) | 29(1.20) | 30(0.67) | 3(1.78%) |
Header ID annotations:
- F1-measure: The sum of F1 scores for the pipeline's detection of different SV types (DEL, INS, INV, DUP, BND).
- Precision-measure: The sum of Precision scores for the pipeline's detection of different SV types (DEL, INS, INV, DUP, BND).
- Recall-measure: The sum of Recall scores for the pipeline's detection of different SV types (DEL, INS, INV, DUP, BND).
- GT F1-measure: The sum of F1 scores for the pipeline's detection of different SV types (DEL, INS, INV, DUP, BND) considering GT consistency.
- GT Precision-measure: The sum of Precision scores for the pipeline's detection of different SV types (DEL, INS, INV, DUP, BND) considering GT consistency.
- GT Recall-measure: The sum of Recall scores for the pipeline's detection of different SV types (DEL, INS, INV, DUP, BND) considering GT consistency.
- DEL-F1: The F1 score for the pipeline's detection of SV type DEL.
- INS-F1: The F1 score for the pipeline's detection of SV type INS.
- DUP_INS F1: The F1 score for the pipeline's detection of SV type DUP_INS (INS and DUP converted to INS).
- INV-F1: The F1 score for the pipeline's detection of SV type INV.
- DUP-F1: The F1 score for the pipeline's detection of SV type DUP.
- BND-F1: The F1 score for the pipeline's detection of SV type BND.
- DEL-Precision: The Precision score for the pipeline's detection of SV type DEL.
- INS-Precision: The Precision score for the pipeline's detection of SV type INS.
- DUP_INS-Precision: The Precision score for the pipeline's detection of SV type DUP_INS (INS and DUP converted to INS).
- INV-Precision: The Precision score for the pipeline's detection of SV type INV.
- DUP-Precision: The Precision score for the pipeline's detection of SV type DUP.
- BND-Precision: The Precision score for the pipeline's detection of SV type BND.
- DEL-Recall: The Recall score for the pipeline's detection of SV type DEL.
- INS-Recall: The Recall score for the pipeline's detection of SV type INS.
- DUP_INS-Recall: The Recall score for the pipeline's detection of SV type DUP_INS (INS and DUP converted to INS).
- INV-Recall: The Recall score for the pipeline's detection of SV type INV.
- DUP-Recall: The Recall score for the pipeline's detection of SV type DUP.
- BND-Recall: The Recall score for the pipeline's detection of SV type BND.
- DEL-svlen-biase:0: The cumulative proportion of DEL length deviation being 0 detected by the pipeline across different SV length ranges.
- INS-svlen-biase:0: The cumulative proportion of INS length deviation being 0 detected by the pipeline across different SV length ranges.
- DEL-breakpoint-biase:0: The cumulative proportion of DEL breakpoint deviation being 0 detected by the pipeline across different SV length ranges(50-100 bp, 100-500 bp, 500 bp-1 kb, 1-2.5 kb, and >2.5 kb).
- INS-breakpoint-biase:0: The cumulative proportion of INS breakpoint deviation being 0 detected by the pipeline across different SV length ranges(50-100 bp, 100-500 bp, 500 bp-1 kb, 1-2.5 kb, and >2.5 kb).
- MIER: The Mendelian Inheritance Error Rate of the pipeline.
References
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