构造器和说明 |
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Chain(long score,
java.lang.String id,
Chromosome sourceName,
int sourceSize,
Strand sourceStrand,
int sourceStart,
int sourceEnd,
Chromosome targetName,
int targetSize,
Strand targetStrand,
int targetStart,
int targetEnd)
构造链映射信息
|
限定符和类型 | 方法和说明 |
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LiftOver.Chain |
addBlock(int[] block)
设置比对块
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public Chain(long score, java.lang.String id, Chromosome sourceName, int sourceSize, Strand sourceStrand, int sourceStart, int sourceEnd, Chromosome targetName, int targetSize, Strand targetStrand, int targetStart, int targetEnd)
score
- chain scoreid
- chain IDsourceName
- chromosome (reference/target sequence)sourceSize
- chromosome size (reference/target sequence)sourceStrand
- strand (reference/target sequence)sourceStart
- alignment start position (reference/target sequence)sourceEnd
- alignment end position (reference/target sequence)targetName
- chromosome (query sequence)targetSize
- chromosome size (query sequence)targetStrand
- strand (query sequence)targetStart
- alignment start position (query sequence)targetEnd
- alignment end position (query sequence)public LiftOver.Chain addBlock(int[] block)
block
- 映射块信息