edu.sysu.pmglab.gbc.command

类 GBCEntry

java.lang.Object

edu.sysu.pmglab.gbc.command.GBCEntry

public class GBCEntry
extends java.lang.Object

字段概要

字段

限定符和类型	字段和说明
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	annotate
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	bed2gtb
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	chromosome
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	concat
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	edit
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	gtb2bed
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	gtb2tsv
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	gtb2vcf
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String>	gui
edu.sysu.pmglab.commandParser.CommandOption<?>	help
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	index
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	ld
static org.slf4j.Logger	logger
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	maf2gtb
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	merge
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String>	show
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	sort
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	split
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	tsv2gtb
edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]>	vcf2gtb

方法概要

限定符和类型	方法和说明
static void	main(java.lang.String[] args)
static GBCEntry	parse(edu.sysu.pmglab.container.File argsFile)
static GBCEntry	parse(java.lang.String... args)

从类继承的方法 java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

字段详细资料

logger

public static final org.slf4j.Logger logger

help

public final edu.sysu.pmglab.commandParser.CommandOption<?> help

vcf2gtb

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> vcf2gtb

maf2gtb

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> maf2gtb

tsv2gtb

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> tsv2gtb

bed2gtb

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> bed2gtb

gui

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String> gui

show

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String> show

gtb2vcf

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> gtb2vcf

gtb2tsv

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> gtb2tsv

gtb2bed

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> gtb2bed

edit

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> edit

sort

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> sort

split

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> split

concat

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> concat

merge

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> merge

annotate

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> annotate

ld

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> ld

chromosome

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> chromosome

index

public final edu.sysu.pmglab.commandParser.CommandOption<java.lang.String[]> index

方法详细资料

parse

public static GBCEntry parse(java.lang.String... args)

parse

public static GBCEntry parse(edu.sysu.pmglab.container.File argsFile)
                      throws java.io.IOException

抛出:

java.io.IOException

main

public static void main(java.lang.String[] args)