Frequently Asked Questions (FAQ)

1. Why do I need KGGA?

Response: KGGA is a fast and convenient platform designed for large-scale genotype analysis of extensive population samples. It provides a wide range of powerful quality control (QC) and analysis functions, along with comprehensive resources to support your work. Additionally, KGGA integrates seamlessly with external tools and platforms, making it a versatile choice for diverse genetic analyses.

2. How do I cite KGGA?

Response: We kindly ask that you cite the publications of the methods you use within KGGA. This practice helps readers understand the underlying principles and methodologies applied in your analyses.

3. Where do I report bugs and provide feedback on KGGA?

Response: To report bugs or share feedback, please send an email to limx54@163.com. We welcome your input to help improve the platform.

4. How can I use generative AI to assist with KGGA?

Response: You can leverage generative AI by uploading the PDF version of the KGGA user manual to the AI tool. Once uploaded, you can ask specific questions, such as: "Please generate commands for me to perform gene-based prioritization using KGGA with my VCF.gz input file (path=abc.vcf.gz) and reference genome hg19." This approach allows you to quickly obtain tailored guidance for your tasks.