Software Platforms

KGGA
KGGA
KGGA is an open-source genomic platform that accelerates large-scale genetics studies by 10-100 times through its super-efficient file system (GTB/CCF), enabling the analysis of millions of samples on standard workstations.
SDFA
SDFA
kSDFA is a toolkit for efficient analyses of structural variants (SV) and phenotypes, designed to accurately and rapidly parse, store, annotate, and analyze SV data in large population samples.
KGGSUM
KGGSUM
KGGSum integrates multi-omics data with GWAS summary data through statistical modeling to prioritize associated and causal genes, cell types, drugs, and other environmental factors of complex phenotypes.
KGG
KGG
A systematic biological Knowledge-based mining system for Genome-wide Genetic studies.
KGGSeq
KGGSeq
A biological Knowledge-based mining platform for Genomic and Genetic studies using Sequence data.
KGGSEE
KGGSEE
A biological Knowledge-based mining platform for Genomic and Genetic association Summary statistics using gEne Expression.
RNA-SSNV
RNA-SSNV
A reliable somatic single nucleotide variant identification framework for bulk RNA-Seq data.
GBC
GBC
A high-performance compression tool designed specifically for genomic data.
FAPI
FAPI
Fast and Accurate P-value Imputation for genetic association.
SnpTracker
SnpTracker
Tool to track SNPs.
IGG
IGG
A tool to Integrate Genotypes for genome-wide Genetic Studies.
GEC
GEC
Genetic Type I Error Calculator.

Apps

PCGA
PCGA
Simultaneously estimate associated tissues/cell types and genes of complex diseases and traits by GWAS summary statistics.
REZ
REZ
Robust-regression z-score.
PSC
PSC
a comprehensive web server for resolving spatial heterogeneity of cell types associated with complex phenotypes