常量字段值

目录

• edu.sysu.*

edu.sysu.*

edu.sysu.pmglab.gbc.GTBFormat

限定符和类型	常量字段	值
public static final java.lang.String	alleleField	"ALLELE"
public static final java.lang.String	chromosomeField	"CHROM"
public static final int	DEFAULT_BLOCK_MEMORY	134217728
public static final int	DEFAULT_COMPRESSION_LEVEL	16
public static final boolean	DEFAULT_PHASED	false
public static final int	DEFAULT_VARIANT_NUM	16384
public static final java.lang.String	genotypeField	"GENOTYPE"
public static final java.lang.String	positionField	"POS"
public static final java.lang.String	VERSION	"stable-1.0"

edu.sysu.pmglab.gbc.linkagedisequilibrium.LDCalculator

限定符和类型	常量字段	值
public static final float	DEFAULT_MAF	0.05000000074505806f
public static final float	DEFAULT_MIN_R2	0.20000000298023224f
public static final int	DEFAULT_WINDOW_SIZE_BP	10000

edu.sysu.pmglab.gbc.qualitycontrol.VariantPhredQualityScoreController

限定符和类型	常量字段	值
public static final float	DEFAULT	30.0f
public static final float	MAX	3.4028234663852886E38f
public static final float	MIN	0.0f

edu.sysu.pmglab.gbc.qualitycontrol.genotype.GenotypeADController

限定符和类型	常量字段	值
public static final float	HETEROZYGOUS_DEFAULT	0.25f
public static final float	HETEROZYGOUS_DISABLE	0.0f
public static final float	HETEROZYGOUS_MAX	1.0f
public static final float	HETEROZYGOUS_MIN	0.0f
public static final float	HOMOZYGOUS_ALT_DEFAULT	0.75f
public static final float	HOMOZYGOUS_ALT_DISABLE	0.0f
public static final float	HOMOZYGOUS_ALT_MAX	1.0f
public static final float	HOMOZYGOUS_ALT_MIN	0.0f
public static final float	HOMOZYGOUS_REF_DEFAULT	0.05000000074505806f
public static final float	HOMOZYGOUS_REF_DISABLE	1.0f
public static final float	HOMOZYGOUS_REF_MAX	1.0f
public static final float	HOMOZYGOUS_REF_MIN	0.0f

edu.sysu.pmglab.gbc.qualitycontrol.genotype.GenotypeDPController

限定符和类型	常量字段	值
public static final int	DEFAULT	8
public static final int	MAX	2147483645
public static final int	MIN	0

edu.sysu.pmglab.gbc.qualitycontrol.genotype.GenotypeGQController

限定符和类型	常量字段	值
public static final int	DEFAULT	20
public static final int	MAX	2147483645
public static final int	MIN	0

edu.sysu.pmglab.gbc.qualitycontrol.genotype.GenotypePLController

限定符和类型	常量字段	值
public static final int	DEFAULT	20
public static final int	MAX	2147483645
public static final int	MIN	0

edu.sysu.pmglab.gbc.qualitycontrol.info.VariantFSController

限定符和类型	常量字段	值
public static final float	DEFAULT	60.0f
public static final float	MAX	3.4028234663852886E38f
public static final float	MIN	0.0f

edu.sysu.pmglab.gbc.qualitycontrol.info.VariantMQController

限定符和类型	常量字段	值
public static final float	DEFAULT	20.0f
public static final float	MAX	3.4028234663852886E38f
public static final float	MIN	0.0f

edu.sysu.pmglab.gbc.variant.genotype.Genotype

限定符和类型	常量字段	值
public static final int	MAX_GENOTYPE_CODE	254
public static final int	MIN_GENOTYPE_CODE	0