edu.sysu.pmglab.gbc.annotation.impl.liftOver

类 LiftOver.Chain

java.lang.Object

edu.sysu.pmglab.gbc.annotation.impl.liftOver.LiftOver.Chain

封闭类:

LiftOver

public static class LiftOver.Chain
extends java.lang.Object

描述链的映射信息 格式参考: ...

构造器概要

构造器

构造器和说明
Chain(long score, java.lang.String id, Chromosome sourceName, int sourceSize, Strand sourceStrand, int sourceStart, int sourceEnd, Chromosome targetName, int targetSize, Strand targetStrand, int targetStart, int targetEnd) 构造链映射信息

方法概要

限定符和类型	方法和说明
LiftOver.Chain	addBlock(int[] block) 设置比对块

从类继承的方法 java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

构造器详细资料

Chain

public Chain(long score,
             java.lang.String id,
             Chromosome sourceName,
             int sourceSize,
             Strand sourceStrand,
             int sourceStart,
             int sourceEnd,
             Chromosome targetName,
             int targetSize,
             Strand targetStrand,
             int targetStart,
             int targetEnd)

构造链映射信息

参数:

score - chain score

id - chain ID

sourceName - chromosome (reference/target sequence)

sourceSize - chromosome size (reference/target sequence)

sourceStrand - strand (reference/target sequence)

sourceStart - alignment start position (reference/target sequence)

sourceEnd - alignment end position (reference/target sequence)

targetName - chromosome (query sequence)

targetSize - chromosome size (query sequence)

targetStrand - strand (query sequence)

targetStart - alignment start position (query sequence)

targetEnd - alignment end position (query sequence)

方法详细资料

addBlock

public LiftOver.Chain addBlock(int[] block)

设置比对块

参数:

block - 映射块信息

返回:

本类